Globicephala melas (long-finned pilot whale): 115856470
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Entry
115856470 CDS
T11080
Symbol
SOX2
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04390
Hippo signaling pathway
gmf04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
115856470 (SOX2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
115856470 (SOX2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmf03000
]
115856470 (SOX2)
Transcription factors [BR:
gmf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115856470 (SOX2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115856470
NCBI-ProteinID:
XP_060154359
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All DBs
Position
4:complement(85042422..85769816)
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AA seq
324 aa
AA seq
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MYNMMETELKPPGPQQTSGGGGGGGGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSR
GQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR
RKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSM
MQDQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTP
GMALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLH
MSQHYQSGPVPGTAINGTLPLSHM
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatgatggagacggagctgaagccgccgggcccgcagcaaacttcggggggc
ggcggcggcggcggcggcggcggcggcggcaactccaccgcggcggcggcgggcggcaac
cagaagaacagcccggaccgcgtcaagcggcccatgaacgccttcatggtgtggtcccgc
gggcagcggcgcaagatggcccaagagaaccccaagatgcacaactcggagatcagcaag
cgcctgggggccgagtggaaacttttgtcggagacggagaagcggccgttcatcgacgag
gccaagcggctgcgagcgctgcacatgaaggaacacccggattataaataccggccccgg
cggaaaaccaagacgctcatgaagaaggataagtacacgctgccgggagggctgctcgcc
cctggcggcaacagcatggcgagcggggtcggggtgggcgccggcctcggcgcgggcgtg
aaccagcgcatggacagctacgcgcacatgaacggctggagcaacggcagctacagcatg
atgcaggaccagctgggctacccgcagcacccgggcctcaacgcgcacggcgccgctcag
atgcagcccatgcaccgctacgacgtgagcgccctgcagtacaactccatgaccagctcg
cagacctacatgaacggctcgccgacctacagcatgtcctattcgcagcagggcacccct
ggcatggctcttggctccatgggctcggtggtcaagtccgaggccagctccagccccccc
gtggttacctcttcttcccactccagggcgccctgccaggccggggacctccgggacatg
atcagcatgtacctccccggcgccgaggtgccggagcccgccgcccccagcagacttcac
atgtcgcagcactaccagagcggcccggtgcccggcacggccattaacggcacactgccc
ctctcgcacatgtga
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integrated database retrieval system
