Globicephala melas (long-finned pilot whale): 115856923
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Entry
115856923 CDS
T11080
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115856923 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115856923 (EDC4)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115856923 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
115856923 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
115856923
NCBI-ProteinID:
XP_030719471
LinkDB
All DBs
Position
19:44187990..44199215
Genome browser
AA seq
1401 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVPDPLCSSDGT
STNKPGLRAMPPINLQEKQVICLLGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVVPLPTHP
AHEDFAFPTAFGESRPELASEGLGSATHGSQSDLRRIVELPAPADFLSLSSETKPKLMTP
DAFMTPSTSLQQIAASPSSSSSSSSSSSLTAVSAMSSTSAVDPSLPSRPPEELTLSPKLQ
LDGGLTISSSSSLQASPRSLLPGLLPSPADKLPPKGPGQVPTAASTLSLELQEVEPLGLP
QASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDSMASAASALHLLS
PRPRPGPELGPQLSLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETCSS
LAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTKVP
TPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSSVGSRLTEHQVAEAPEDWPALIWQQQRE
LAQLRHSQEELLQRLCTQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQLQ
EQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEGS
MKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDS
FRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVRAEV
QHQLHVAVGSLQEAILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPTTHLD
CQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVLLS
LIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNS
LGKAARRLSLMLHGLMTPSLP
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgtgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggcccgcggggggtcccagtgcagagagccagcgaccatctaatgcc
tacaatggagatctcaatgggctcctggtcccagaccccctctgctcaagtgatggtact
tcaacaaacaagcctggtctccgagccatgcctcctattaacctgcaggaaaagcaggtc
atctgcctcttaggagacgacagttccacctgcatcggaattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcgagcaaggcacgggggagcaacaaggtgaaa
atccagcccgtcgccaagtatgactgggagcagaaatactactatggcaacctgattgct
gtgtccaactctttcttggcctatgctattcgggctgccaacaacggctcagcgatggta
cgggtgatcagtgtcagcacttcagagaggaccctgctcaaaggcttcacaggcagtgtg
gctgatctggcctttgcacacctcaattccccacagctggcctgcctggatgaggcaggc
aacctgtttgtgtggcgcttggccctggttaatggcaaaattcaagaagagatcttggtc
catatccgacagccagagggcactccactgaatcacttccgcaggatcatctggtgcccc
ttcatccccgaagagagtgaggactgctgtgaggagggcagcccaacggtggccctgttg
catgaggaccgggctgaggtgtgggacctggacatgctccgctccaaccacagcacctgg
cccgtggatgtcagccagatcaagcagggcttcatcgtggtaaaaggccacagcacatgc
ctaagtgaaggggccctctcacctgatgggactgtcctggctaccgcaagtcatgatggc
ttcgtcaagttctggcagatttacattgaggggcaggatgagccaaggtgtttgcacgag
tggaagcctcacgatgggaggcccctctcctgcctcctgttctgtgacaaccacaagaaa
caggatcctgaggtccccttctggaggttccttattactggtgctgaccagaatcgggag
ctgaagatgtggtgcacggtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagctcagtgagtgtgcccccaagcctcaaggtttgcctggacctctcagcagaa
tacctgattctcagcgatgtgcaacggaaggtcctctacgtgatggaactgctgcagaac
caggaggagggccgtgcctgcttcagctccatctctgagttcctgctcacccaccctgtg
ctgagcttcggtatccaggttgtgagtcgctgccggctgcggcacactgaggtgctgcca
gccgaggaggagaatgacagcctaggggctgatgggacccacggagctggtgccatggag
tctgcagctggtgtgctcatcaagctcttttgtgtgcacactaaggcattgcaagatgta
caaattcgcttccagccacagctgaaccctgacgtggtggtcccgctccctacacaccct
gcccatgaggactttgcttttcccacagcatttggagagtctcgaccagaactggcttct
gagggcctgggatcggccactcacggctcccagtctgacctccgacgcatcgtggagctg
cctgcacctgccgacttcctcagtctgagcagtgagaccaagcccaagctgatgacacct
gacgccttcatgacacctagcacctccctgcagcagatcgctgcatctcccagtagcagc
agcagcagcagcagcagttcctctcttacggcggtgtctgccatgagcagtacttcggcc
gtggacccctccttgcccagcaggccacctgaggagctgaccttgagccccaagctacag
ctggatggcggtctgacaataagcagcagtagcagcctgcaggcaagcccacgtagcctc
ctgcctggcctgctcccaagtccagccgacaaattgcctcccaaagggcctgggcaggtg
cctactgctgcctctacactatccctggagctgcaggaagtggagcccctggggctacct
caggcgtcccccagccgcacccgctcccccgatgttatctcctcggcttccactgccctg
tcccaggatatccctgagatcgcatctgaggcgctgtcccgtggctttggctcctccgct
ccggagggcctggagccagacagtatggcctcagctgcttcagcactacacctgctgtct
ccacggccccggccgggacccgagcttggcccccagcttagcctggatggaggccctggg
gatggggatcggcatagtaccccttccctcctggaggcagccttgacccaggaggccacg
gcccctgacagtcaggtctggcctacggcaccagacattactcgtgagacctgcagcagc
ctggcagagagcccccggaatggcctccaggaaaagcacaagagcctggcctttcaccga
ccaccttatcacctgctacagcaacacgacagtcaggacgccagtgctgagcaaagcgac
catgatgatgaggtggccagcctggcctctgctgcagggggttttggcaccaaagttccc
actccacgtcttcctgccaaggactggaagaccaaaggatcccctcgggcctcacccaag
ctcaagcgaaagggcaaaaaggatgacggggattcgtccgtgggatcccggctcacagag
caccaggtggcagaggcccctgaggactggccagcactaatttggcaacagcagagagag
ctggcgcagcttcgacacagccaagaagagctgctacagcgtctgtgcacccaacttgaa
ggcctgcagagcaccgtcacgggccacgtagaacgtgccctagagtcacggcacgagcag
gagcagcggcgactggagcgggcactggccgagggacagcagcgtggtgggcagctgcag
gagcagctgacgcaacagctgtcccaagcgctatcttcagctgtggctgggcggctggag
cgcagcatacgggatgagatcaagaagacggttcctccatgtgtgtctaggagtctggag
cccgtggcaggccaactgagcaactcagtggccaccaagctcacagccgtggagggtagc
atgaaagagaatatctccaagctgctgaagtccaagaacttaacagatgccattgcccga
gcagccgcagacacgttacaggggccgatgcaggccgcctaccgtgaagccttccagagc
gtggtactgcccgcctttgagaagagctgccaggccatgttccagcagatcaatgatagc
ttccgactgggcacgcaggaatacttgcagcagctggagagccacatgaagagccgaaag
gcacgagaacaggaggcgcgggagcccgtgctggcccagctgcggggcctggtcagcacg
ctgcagggagccacggagcagatggcggctaccgtgtccagcagcgttcgggctgaggtg
cagcaccagctgcacgtggctgtgggcagcctgcaagaggcaattttagcacaggtgcag
cgcattgttaagggtgaggtgagtgtggcactcaaggagcagcaggctgccgtcacctct
agcatcatgcaggccatgcgctcagctgctggcacacctgtccctaccacccacctcgac
tgccaagcccagcaagcccatatcctgcagctgctgcagcagggccacctcaaccaggcc
ttccagcaggccctgacagctgccgacctgaacctggtgctgtacgtgtgtgaaactgta
gacccaggccaggtgtttgggcagccaccttgccccctctcccagcctgtactcctttca
ctcatccagcaactggcctctgaccttggcactcgaactgacctcaagctcagctacctg
gaagaggctgtgatgcacctggaccacagtgaccccatcactcgggaccacatgggctcc
gtcatggcccaggtgcgccagaagctcttccagttcctgcaggcggagccacacaactca
cttggcaaagcggcccggcgtctcagcctcatgctgcacggccttatgacccccagcctc
ccttag
DBGET
integrated database retrieval system
