Globicephala melas (long-finned pilot whale): 115857172
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Entry
115857172 CDS
T11080
Symbol
SYNPO2
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115857172 (SYNPO2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
gmf04990
]
115857172 (SYNPO2)
Domain-containing proteins not elsewhere classified [BR:
gmf04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
115857172 (SYNPO2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
Calsarcin
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
115857172
NCBI-ProteinID:
XP_030719826
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Position
5:complement(22002305..22174671)
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AA seq
1090 aa
AA seq
DB search
MGTGDFICISMTGGAPWGFRLQGGKEQQQPLQVAKIRSQSKASGSGLCEGDEVVSINGSP
CADLTHPEVVKLMESITDSLQMLVKRPSSGISETLNSETENKNHERLIHEGYVESTTLQI
RPATKSQYREFYIAQVKSGAPLAEDQASGAGFSGSIKEETGLAPHTYDSKSGRLPEEVIL
REKAEAGRPGTVVELQLSLSQERHKRTSAPVVALLGTEKSEPPDQDPNLQHDGIVHINSV
PTNEKGEPCLRSSKIIQISSGQELRVIQGSEAGDTGLPRVEVIFDCSDRQKTEGSRLQAG
KGCVDSPVEGGQSEAPPSLVSFAVSSEGTEQGEDPRSERDHSRPHKHRARHARLRRSESL
SEKQVKEAKSKCKSIALLLTDAPNPNSKGVLMFKKRRRRARKYTLVSYGTGELDREAEEE
EEEGDKEDTCEVAFLGASESEVEEELLSDTDDNTQVVNFDWDSGLVDIEKKLSRGDKMEM
LPDTTGKGALMFAKRRERMDQITAQKEEERVSGMPSREPDAAQMDGLRTMISYQRKEEES
VRVQRSASKSYIEVSHGLGHVPQQNGFTGLSETAEAQRMIPMNRTAKPFPGSVNQPATPF
SPTRNMTSPIADFPAPPPYSAVTPPPETFSRAVSSPTAGPAQLPPWPQPGPWSQPAFYDS
SEQIASRDERIAVPAKRTGILQEAKRRSTTKPMFTFKEPKVSPNPELLSLLQNSEGKKGT
GAGGDSGPEEDYLSLGAEACNFMQSPTAKQKTPPPVAPKPSVKSSSSQPVTPVSPVWSPG
VAPAQPPAFPTSNPSHGTVVSSIKIAQPSYPTARPASALSLAGPFKGPQASVASLNYTPK
PSAPTPTVNTAHTGAMGPSNELPGMSGKGAQLFAKRQSRMKKYVVDSDTVQAHAARAQSP
TPSLPAGWKYSSNVRAPPPVAYNPIHSPSYPLAAVKSQPSAPQASKSSKKKGKKPLNALD
VMKHQPYQLNASLFTFQPPDAKDGLPAKSSVKVSSLPAMKQAIPPRPVNAGSPTNVQASS
VYSVPAYSSQPSFFAEATSPVSASPVPVAIPTSPKQESASTSYFVAPRPKFSAKKSGVTV
QVWKPSVAEE
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccggggattttatctgcatttccatgaccggaggggcgccctggggcttcaga
ctgcaaggtggcaaggagcagcagcagcccttacaagttgctaagatccgaagccagagc
aaagcctccgggtctgggctctgtgagggggatgaagtggtttctatcaatggcagtcct
tgtgcagacctcacccacccagaagtcgtcaagctcatggagagcataacagactctctc
caaatgctcgtcaaaagaccatccagtggaataagtgagactttgaactctgaaactgaa
aacaaaaaccacgagcgtctcatccatgaagggtacgtggaaagtaccaccctacagatt
cgaccagccacaaagagccagtacagggagttctacatcgcccaggtcaagagtggagct
cccctagctgaggaccaagcaagtggtgctggtttttctgggagcataaaagaagaaaca
ggcctggctcctcacacgtatgactctaaaagtggacgcttaccagaggaggttatctta
agggagaaggcagaagcggggcggccaggcactgtggttgagctacaactgtccctttca
caagagagacacaagcgcacgagtgcccctgtagtggctctcctgggaactgaaaaatct
gagcctcctgaccaagatcctaatttacagcatgacgggatcgtccacataaattctgtc
cccactaatgagaaaggggagccttgtctgaggtccagcaagataatccagatctccagt
ggccaagagttgagagtgatccagggaagtgaagcaggagacaccgggctgccccgagtg
gaagtgatcttcgactgctctgataggcagaagacggaagggagcaggcttcaggcagga
aaggggtgtgtggattctccagtggaaggagggcagtcagaagcacctccttctctggta
tcctttgcagtctcatcagaaggcacagagcagggagaagatccacgctcagaaagggat
cacagcagacctcacaagcacagagcacgccacgcacggctcaggaggagtgaaagccta
tcagaaaagcaggtgaaagaagcaaaatctaaatgcaaaagcattgcgctccttctgaca
gatgcccccaaccccaactccaagggggtgttgatgtttaagaagcgccgtcggagggcc
aggaaatacaccctagtcagttacgggactggtgaacttgatcgagaggcagaggaggag
gaggaagaaggcgacaaagaggatacatgtgaagtagcatttctgggtgcaagcgaatcc
gaggtggaggaagagttgttgtctgacactgacgacaacacacaagttgtgaactttgac
tgggattctggactagtggacattgaaaagaaactgagcagaggggacaagatggagatg
ttgccagacaccacaggcaagggggccctcatgtttgctaagaggagggagagaatggat
cagatcacagcccaaaaagaggaggagagggtgagtggaatgccaagcagagaaccagat
gctgcccagatggatggcctgagaaccatgatatcttaccaaaggaaggaagaagaatcg
gtgagagtgcagagatctgcgagcaaaagctacatcgaggtgagccatggccttggccat
gtgccccaacagaatggcttcactgggttgtccgagacagcagaggctcagaggatgatc
cctatgaatagaacggccaaacccttcccggggtccgtgaaccagccagcaaccccattc
tctccaacgcgaaacatgaccagtcccattgctgactttcctgcgcctccaccttattct
gcagtcacacccccacctgaaaccttctccagagcagtgtcaagtccgacagctggccca
gcacagctccctccgtggccccagcctggcccatggtcccagccagccttttacgattca
tctgaacaaatagcttcccgggatgaaaggatcgcggtgccagcaaaaagaacaggaata
ttgcaggaggccaaaaggagaagcacgacaaaacccatgttcacttttaaagagcccaaa
gtaagcccaaatcctgaactcttgtcacttcttcaaaattcggaaggcaaaaagggcact
ggggcaggaggagattccggaccagaagaagactacctcagtttaggagcagaggcttgt
aatttcatgcaaagccccactgcaaaacaaaagaccccacctcctgtcgctccaaagcct
tctgtcaagtcctcatcctcccaaccagtaactccagtttctccagtctggtcgccagga
gtggctccagcccaacctcctgccttccccacatccaacccatcacatggcaccgttgtt
tcctccatcaaaatagcgcagccttcttaccctactgcccggcctgctagtgctctgagc
ctggctggtcccttcaaaggaccacaagcatcggtagccagtctgaactacactcccaaa
ccatcagctcccacaccaacggtaaacactgctcatactggcgcaatgggaccatccaat
gagcttccaggaatgagtgggaaaggagcccagctctttgctaaaaggcagtcgaggatg
aaaaagtacgtggtagattcagacaccgtgcaagcccatgctgcccgtgctcagtctccc
actccatctctcccggccggctggaagtactcctccaatgtccgagcacctcctcctgtg
gcctacaatcccatccactccccctcgtacccactggctgctgtcaagtcccagccatca
gccccacaggcctccaaatcaagcaagaaaaagggcaagaaaccccttaatgctttggat
gtcatgaagcaccaaccttatcagttaaatgcatccttgtttactttccaacctccagat
gcaaaggatggcctccctgcaaagtcatcagtcaaggtcagttcactgccagccatgaag
caagctattcctcctcggccagtgaatgctggctcgcccactaatgtgcaggcctcgtct
gtgtactcagtgccagcctatagctctcagccttccttctttgccgaggccacctcacca
gtaagcgcctccccagtgcccgtggccattcccacctctccaaagcaagaatcagcctcg
acatcttactttgtggcaccaaggccgaagttctcagcaaagaaaagtggtgtcacagtt
caggtgtggaaaccatctgttgcggaagagtaa
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