Globicephala melas (long-finned pilot whale): 115857580
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Entry
115857580 CDS
T11080
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115857580 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115857580 (CSTF3)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115857580 (CSTF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
115857580
NCBI-ProteinID:
XP_030720634
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All DBs
Position
8:25100886..25172016
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AA seq
717 aa
AA seq
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MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE
LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagacggagccacggagcaggcagctgagtatgtcccagagaaagtgaagaaa
gccgaaaagaaattagaagagaatccctatgaccttgacgcttggagcattctcattcga
gaggcacagaatcaacctatagacaaagcacggaagacttatgaacgccttgttgcccag
ttccccagttctggcagattctggaaactgtacattgaagcagagattaaagctaaaaat
tatgacaaggtcgaaaagctatttcagagatgccttatgaaggttttgcacattgactta
tggaagtgttatctttcatatgtccgagaaaccaagggtaaactaccaagttacaaagaa
aaaatggctcaagcatatgactttgcactggataaaattggaatggaaattatgtcttat
cagatttgggtggattacatcaatttcttaaaaggcgtggaagctgttggatcttatgca
gaaaatcagagaataacagctgttcgaagagtttatcaacgaggttgtgttaatcccatg
atcaacattgaacaactgtggagagactataacaagtatgaagagggtatcaatattcat
ttagctaaaaaaatgattgaagatcggagtagggattacatgaatgctaggcgggtagca
aaggaatatgagacagtaatgaaaggtttggaccgcaatgctccctcagtgcctcctcag
aatactcctcaagaagctcagcaggtagatatgtggaagaaatacatacagtgggaaaag
agcaaccctcttcgtacagaagatcagactcttataactaaaagagttatgtttgcttat
gaacagtgcctgcttgtgctgggccatcaccctgatatttggtatgaagctgcccagtat
cttgagcagtcaagtaaactgttagcagagaaaggagatatgaataatgccaaattattt
agtgatgaagctgctaatatatatgaaagagccataagcactttattaaagaagaatatg
cttctttattttgcatatgcagattatgaagagagtcgcatgaagtatgagaaagttcac
agtatatataacagacttctggcaattgaggatattgaccccaccttggtatatatccaa
tatatgaaatttgcaagaagagcagaaggtattaaatctggaagaatgatatttaaaaaa
gcaagagaagataccagaacccgccaccatgtctatgttactgcagcactcatggagtat
tattgtagtaaggacaaatctgttgcctttaagatttttgagctggggctaaagaaatat
ggagacattccagaatatgtcctggcctatattgactatctttctcacctcaatgaggac
aataatactcgagttttgtttgaacgagttttaacatctggaagtcttccacctgagaag
tctggagaaatctgggcccgatttttagcttttgaaagtaatattggtgatctagctagt
atactcaaagtggagaaaagacggtttacagcattcaaagaagagtatgaaggcaaagaa
acagctttactggtagatagatacaagttcatggatttatatccttgctctgcaagtgaa
ctaaaagcgcttgggtataaggatgtctcccgtgctaagctagcagctataattccagac
ccagttgtagctccttctatagtgcctgttctgaaagatgaagtggatagaaaaccagaa
taccctaaaccagacactcagcagatgattccatttcagccacgacatttagcacctccg
ggcttacaccctgtccctggtggagtgttcccagtaccacctgcagcagttgttttaatg
aaacttctccctcctcctatttgtttccagggtccttttgtacaagtggatgaactgatg
gaaattttccgaagatgcaagataccaaatacagttgaagaagctgtgaggatcattact
ggaggagccccagagctagctgtagaaggcaatggcccggtggaaagtaatgcagtactc
accaaggctgtcaaaaggcccaacgaagattcagacgaagatgaggaaaagggagctgtc
gttccccctgttcatgacatttacagagcaaggcagcagaagcgaattcggtga
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