Globicephala melas (long-finned pilot whale): 115857721
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Entry
115857721 CDS
T11080
Symbol
CSTF2T
Name
(RefSeq) cleavage stimulation factor subunit 2 tau variant
KO
K14407
cleavage stimulation factor subunit 2
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115857721 (CSTF2T)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115857721 (CSTF2T)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115857721 (CSTF2T)
U7-dependent histone pre-mRNA processing factors
115857721 (CSTF2T)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
115857721
NCBI-ProteinID:
XP_030720821
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Position
16:complement(39422208..39426195)
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AA seq
699 aa
AA seq
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MSSLTVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
IMDPEIALKILHRKIHVTPLIPGKSQSVSGPGLCPGPNVLLNQQNPPAPQPQHLARRPVK
DIPPLMQTPIQGGIPAPGPIPAAVAGPGPGPGPLTPGGAMQPQVGMPGVGPVPLERGQVQ
ISDPRAPMSRGPMTAGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHH
ASGHDSRGPSSHDMRGGPLADPRLLIGEPRGPMIDQRGLPMDGRGSRDSRGMETRAMETE
VLETRVMERRGMETCAMEARGMEARGMDARGMEMRGPGPSSRGPMTGGIQGAGPINMGAG
GPQGPRQVASISGVGNPGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAG
MQGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAGMQGAG
MQGAGMQGAGMQGAGMQGASIQGTGMQGASMQGAGKQGGGQPSSFSPGQSQVTPQDQEKA
ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtttgacggtgagagacccggcaatggatcgatcactgcgttccgtgttcgtg
gggaacattccgtatgaggcaactgaggagcagttgaaggacattttctccgaggttggt
tccgttgtgagtttccggctggtatacgatagagagacgggaaaacctaagggttatggc
ttctgcgagtaccaagaccaggagaccgcgcttagtgccatgcggaaccttaacgggcgg
gagttcagcgggagagcgcttcgggtggacaatgctgccagtgaaaagaacaaggaggag
ttaaagagcctggggcctgcagcgcccatcattgactcaccctatggggaccccatcgat
ccagaagatgcccctgagtcaattaccagagcagtcgctagtctgcccccggagcagatg
tttgagctgatgaagcagatgaagctctgtgtccaaaacagtcaccaggaagctcgaaat
atgttacttcaaaacccacagctggcttatgcgctgttgcaggctcaagtagtgatgaga
atcatggatccagagattgctctgaaaattctgcatcgcaaaatacatgtcacaccactc
atcccaggcaaatctcaatccgtttctggccctggcctttgcccaggacctaatgttctg
ctgaaccagcagaatcctccagcccctcagcctcagcatttggccagaagacctgtgaaa
gacatccctcctctgatgcagacccctatccagggtggaattccagccccgggcccaatt
ccagctgcagttgctggccctggccctggccctggccccttaactcctggtggagcaatg
cagccccaagttggaatgccaggggttggtccggtgcccttagagcggggacaggtgcag
atatcagatcctagagctcctatgtctcgtggacccatgactgctggtggcttacctcct
cgaggactgttaggggatgctccaaatgacccacgtggaggaactttgctttcagtcact
ggagaagtagagcccagaggctatcttggcccaccacatcagggccctccaatgcaccat
gcgtctggtcatgacagccggggcccttcctcacatgacatgaggggagggccattagca
gatcccagactgctcattggagaacccagaggacccatgatagatcaaaggggtctacct
atggatggtagaggtagcagagattctcgagggatggagactcgagccatggaaactgag
gtcttagagacacgagtaatggagagaagaggaatggaaacctgtgcaatggaagccaga
gggatggaagcgagaggcatggatgcaagaggaatggagatgaggggccctggccccagt
tcaagaggccctatgactgggggaattcagggtgctggtcctattaatatgggggcaggt
ggtcctcagggacccagacaggtcgcaagcatttcaggggtgggaaatcctggagctggc
atgcagggggcaggtatgcaaggagcaggcatgcagggggcaggtatgcaaggagcaggc
atgcagggagcaggcatgcagggggcaggtatgcaaggagcaggcatgcagggggcaggt
atgcaaggagcaggcatgcagggggcaggtatgcaaggagcaggcatgcagggggcaggt
atgcaaggagcaggcatgcagggggcaggtatgcaaggagcaggcatgcagggggcaggt
atgcaaggagcaggcatgcagggggcaggcatgcagggggcaggcatgcagggggcaggt
atgcagggggcaggtatgcaaggggcaggcatgcagggggcaggcatgcagggggcgagt
atacaagggacaggcatgcagggagcaagcatgcaaggggcaggcaagcaaggtggaggc
cagcctagcagttttagtcctgggcagagtcaggtaaccccacaggatcaagaaaaggca
gctttgatcatgcaggttcttcaactgacagcagatcagattgccatgctgcctcctgag
caaaggcagagtatcctgattttaaaggaacaaatccagaaatctactggagcttcttaa
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