Globicephala melas (long-finned pilot whale): 115857843
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Entry
115857843 CDS
T11080
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115857843 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115857843 (EXOSC1)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115857843 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
115857843 (EXOSC1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
115857843
NCBI-ProteinID:
XP_030721088
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All DBs
Position
16:30047884..30056893
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AA seq
195 aa
AA seq
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MAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLIKSSENGALPVISVMRETE
SQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYK
SFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTK
EFRKVARVQPEFLQT
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggcgccacccgtgaggtactgcatccccggcgaacgtctgtgtaacttggaagagggc
agccccggcagcggcacctacacccggcatggctacatcttttcgtcgcttgctggctgc
ctgataaagagcagcgagaacggcgcgcttcctgtcatatctgtgatgagagaaacagag
tcccaattactaccagatgtgggagctattgtaacctgtaaggtctctagcatcaattca
cgctttgccaaagtacacatcctatatgtggggtccacaccgcttaagaactcttttcga
ggaactatccgcaaggaagacgtccgagctactgaaaaagacaaggttgaaatttataag
agtttccgcccaggggacattgtcttggccaaagtgatctccctaggtgatgcgcagtcc
aactacctcctaaccactgctgaaaatgagctgggagtggtggtggcccacagtgaatcg
ggtgtccagatggttcccatcagctggtgtgagatgcagtgccctaagacccacactaaa
gaattccggaaagtggcccgagtacagcctgaattcttacagacctaa
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