Globicephala melas (long-finned pilot whale): 115858819
Help
Entry
115858819 CDS
T11080
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04382
Cornified envelope formation
gmf04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
115858819 (COL7A1)
09158 Development and regeneration
04382 Cornified envelope formation
115858819 (COL7A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Pur_ac_phosph_N
Kunitz_BPTI
Ig_DSCAM-DSCAML_C
DUF4992
Motif
Other DBs
NCBI-GeneID:
115858819
NCBI-ProteinID:
XP_060163462
LinkDB
All DBs
Position
11:39391666..39424570
Genome browser
AA seq
2974 aa
AA seq
DB search
MRSLRTATKSSPRSPQLEKAHAQQRRPNAEEEMRLRLLVAALCAGILAGAPRVWAQHRER
VSCTRLYAADIVFLLDGSSSIGRSNFREVRGFLEGLVLPFSGAAGAQGVRFAAVQYSDDP
RTEFGLDALGSGGDVIRAIREISYKGGNTRTGAAILHVADRVLLPQVARPGVPKVCILIT
DGKSQDLVDTAAQRLKGQGVKLFAVGIKNADPEELKRIASQPTSDFFFFVNDFNILRTLL
PLVSRRVCTSAGGVPVALPSNDSTSGPRDLVLSEPGSQSLRVQWTAASGPVTGYKIQYTP
LTGLGQPLSSERREVSVPAGETSMRLQGLRPLTEYQVTVVALYANSIGEAVSGTAWTTAL
EGLELTIQNTTAHSLLVAWRGVPGATGYRVTWRVFSGGATQQQELGPGQGSVLLRDLEPG
TDYEVTVSTLLGRSVGPATSLTARTDTSVEQTLRPIILGPTSILLSWNLVPKARGYRLEW
RRESGLEVPQKVVLPSDVTRYQLDGLQPGTEYRLTLYTLLEGHEVATPATVVPPGPELPV
GPVTDLQATELPGQRVRVSWSPVPSATEYRITVRSIQGVERSLVLPGSQTAFDLDDVRAG
LSYTVRVSARVGTREGGASVLTVRREPETPLAIPGLQVVASDATRVRVAWGPVPGASGFR
VSWRTDNGLESSKTLPSESTATDIMGLRPGTSYQVAVSALREREEGPPAITVARTDPLGP
VKTVRVTQVSSSSVTITWNRVPGATGYRVSWHSGHGPEKSQLVSGEATVAELDGLEPDTE
YTVHVWARMAGVDGTPASVVVRTDPQPVGSVSKLQILNASSDVLRVTWVGVTGATAYRLA
WGRSEGGPTRQEMLPGNTDSAEIRGLEGGVSYSVRVTALVGDREGAPVSIVVTTPPEEAP
PALEALRVVQRGEHSLRLRWQPVPGARGFRLRWRPEGGQEQSQVLGPELSSYELDGLEPA
THYRIWLSVLGTAGEGPPSEVTAYTESPRVPSTELRVVDTSVDSVTLAWTPVSGVSSYIL
SWQPLRGPGQELPGASQTLPGISSSQQVTGLEPGVSYIFSLTPVREGVQGPEASVTQTPV
CPHGLMDVVFLLHTTRDNAHRAEAVKRALEHLVSALGPLGPQAIQVGLLSYSHRPSPLFS
LNSSYDLGVIRQKIRNIPYTDPSGNNLGTAVVTAHRYLLAPDAPGRRRHVLGVMVLLVDE
PLRGDIFSSIREAQAAGLKVMMLGLAGADPEQLRRLVPGIDSVQTFFAVDDGPSLDRAVS
SLATALCQTALTTQLQPDPCSVHCPKGQKGEPGEMGLKGQAGPPGPPGLPGRMGVPGPQG
PPGSTIAKGERGFPGADGPPGSPGRPGTPGSPGPKGSPGWPSPRGEPGERGPRGPKGEPG
EPGRVIGGEGPGLPGQKGDPGPPGPPGSRGPLGDPGPRGPPGFSGTAVKGEKGDRGERGP
PGPGDGSVALGEPGLPGLPGSRGPQGSVGPPGEKGEKGDCEDGAPGLPGQPGTPGEPGLR
GLPGVTGPKGDQGLTGAIGETGEKGERGSPGPAGPQGPPGVAGRPGPEGPEGPPGPTGRR
GEKGEPGRPGDPAVGPGGAGAKGEKGDVGLPGPKGATGVKGERGPPGLVLPGDPGPKGDP
GVRGPIGLTGRAGPPGDSGPPGETGDPGRPGSPGPIGPRGRDGEVGGKGDEGPPGEPGLP
GKAGERGLRGAPGTRGPVGDKGDQGDPGEDGRNGSPGPSGPKGDRGEPGPPGPPGRLVDT
GLGVREKGESGDRGQEGPRGPKGDPGPPGASGERGISGLRGPPGPQGDPGVRGPGGEKGD
RGPPGLDGRSGLDGKPGTPGPPGQPGAIGKAGDPGRDGLPGLRGEQGPAGPSGPLGAPGK
PGKDGKPGLNGKNGGPGDPGEDGRKGEKGDSGAPGREGHDGPKGERGAPGSPGLQGPPGI
PGQVGPPGQGFPGVPGGSGSKGDRGETGPKGEQGLPGERGLRGEPGSTANVERLLENIGI
KTSALREIVESWEESSGSFLPVPERRRGPKGDPGERGPPGKEGPTGFSGERGLKGDRGDP
GPQGPPGLAFGERGPPGPPGLAGEPGKPGIPGLPGPAGSVGEAGRPGERGERGEKGERGE
QGRDGPPGLPGPPGPPGPKVAMDEPGSGLSREPGPPGLKGAKGEPGSDGNQGPKGDRGEP
GIKGDRGEPGQRGQNGIPGLPGERGVAGPEGKPGLQGPRGTPGPMGGHGDPGPPGAPGLA
GPAGPQGPSGLKGEPGETGPPGRGLPGPTGAVGLPGPPGASGLVGPQGAPGLPGQVGETG
KPGVPGRDGASGKDGDRGAPGVPGSPGLPGPVGPKGEPGPMGTPGQAVVGPPGAKGEKGT
PGGLAEDLVGEPGAKGDRGLPGPRGQKGEAGRAGEPGDPGEDGQKGAPGLKGHKGDPGVG
VQGPPGPIGPPGLKGDLGPPGTRGAPGIVGFPGQTGPRGEMGQPGPSGERGLAGPPGREG
APGPLGPRGPLGLAGAPGAPGLKGDKGDTGAGPPGARGERGEPGVRGEDGRPGLEGPRGL
VGPPGSRGERGEKGDPGTSGLKGDKGDSAVIMGPPGPRGAKGDMGERGPRGIDGDKGPRG
DSGDPGEKGAKGQPGDKGSAGLLGVRGLTGPKGEPGAAGIPGEPGSRGKDGAPGVRGDKG
DVGFMGPRGLKGEQGVKGACGLDGEKGDKGEAGPPGRPGLAGRKGELGEPGVPGQSGAPG
KEGLIGPKGDRGFDGQPGPKGDQGEKGERGPPGIGGFPGPRGSDGSSGPPGPPGSIGPKG
PEGLQGQKGERGPPGESVVGAPGVPGTPGERGEQGRPGPVGPRGEKGEAALTEDDIRGLV
RQEMIQHCACQGQFITSGSRPLPSYAADTAGPQLHAVPILRVSHAEEEGQVPPEDDEYEY
SEYSVEEYQDPEAPWDGDAPDPCSLPLDEGSCTAYTLRWYHRAVAGGAEACHPFVYGGCG
GNANRFGTREACEHRCPPRVAQSQGTGAAGSLGR
NT seq
8925 nt
NT seq
+upstream
nt +downstream
nt
atgagaagcctacgcactgcaacgaagagtagcccccgctcaccgcaactagagaaagcc
cacgcgcagcaacgaagacccaatgcagaagaagagatgaggctgcggctcctggtggct
gcgctctgcgcggggatcctggcaggggctccccgagtgtgggcccagcacagggagaga
gtgagctgcacgcgcctttacgccgctgacatcgtgttcctactcgacggctcctcgtcc
attggccgaagcaacttccgcgaagtgaggggtttccttgaggggctggtgctgcccttc
tccggggcagccggtgcacagggtgtgcgcttcgctgccgtgcagtacagcgatgaccca
cggacagaatttggcctggatgcgcttggctcaggaggtgatgtgatccgtgcaatccga
gagatcagctacaagggaggcaacacgcgcacaggagctgcaattctccacgtggctgac
cgtgtccttctgccccaggtggcccgacctggtgttcccaaggtctgcatcctcatcaca
gatgggaagtcccaggacctggtggacacagctgcccagaggctgaaggggcagggagtc
aagctgtttgctgtggggatcaagaatgccgaccctgaggagctgaagcgaatcgcctca
cagccgaccagcgatttcttcttcttcgtcaacgacttcaacatcttgaggacgctactg
cctcttgtttcccggagggtgtgcacaagtgcaggtggcgtgcctgtggccttgccctcc
aatgactcaacctctggtccacgagacctggtgctgtctgagccaggcagtcaatccttg
agagtacaatggacagcggccagtggccctgtgactggctacaagatccagtacacgccc
ctgacggggctgggacagccactgtcgagtgaacggcgggaggtgagcgtcccagcaggt
gagaccagcatgaggctgcagggtctccggccactgactgagtaccaagtgacggtggtt
gccctctacgccaacagcatcggggaggccgtgagtgggacagcttggacaactgctctg
gagggactggagctgaccatccagaacaccacagcccacagcctcctggtagcctggcgg
ggtgtgccaggtgccactggctaccgcgtgacatggcgggtcttcagtggtggggccacg
cagcagcaggagctgggccctgggcaggggtcagtgctgctgcgtgacctggagcctggc
acagactatgaggtgaccgtgagcaccctgcttggccggagcgtggggcctgccacctcc
ctgactgcccgcaccgacacttctgttgagcagaccctgcgtcccatcatcctgggcccc
acatccatccttctttcctggaacttggtgcctaaggcccgtggctaccggctggagtgg
cggcgtgagagtggcttggaggtgccacagaaggtggtgctgccctctgacgtgacccgc
taccagttggatgggctgcaaccaggcactgagtatcgcctcacactctacacgctgcta
gagggccacgaggtggccacgcctgcaactgtggtcccccctgggccagagctgcccgtg
ggccctgtgacagacctacaggccaccgagctgcctgggcagcgagtgcgagtgtcctgg
agcccagttcccagcgccaccgagtatcggatcaccgtgcgcagcatccagggggtcgag
cggagcctggtgcttcctgggagtcagacagcttttgacttggatgacgtccgggctggg
ctgagctacacagtgcgggtgtcagctcgagtaggcacccgagagggtggtgccagcgtc
ctcactgttcgcagggagccagaaaccccacttgccatcccagggctgcaggtagtggcg
tcagacgcaacacgagtgagggtggcctggggacctgtgcctggagccagtggatttcgg
gttagctggaggacagacaatggtctggagtccagcaagacattgccctcagagtctact
gccacagatatcatggggctgagacctggaacctcctaccaggtggctgtgtcggcattg
cgagagagagaggagggcccacctgcaatcaccgtggctcgaactgacccactgggccca
gtgaagacagtccgtgttactcaagtcagcagctcatctgtcaccatcacctggaacagg
gttcctggtgccacaggatacagggtctcctggcactcaggccacggcccagagaaatcc
cagttggtttctggggaggccacagtggctgagctggatgggctggagccagataccgag
tacacagtgcatgtgtgggcccgtatggctggtgtggatgggacccctgcctctgtggtt
gtaaggactgaccctcagcccgtgggcagtgtctcgaagctgcagatcctcaatgcttcc
agtgatgttctccgggtcacctgggtgggggtcactggagccacagcttacagactggcc
tggggccggagcgagggtggccccacgagacaggagatgctcccaggaaacacggactcc
gcagagatacggggccttgaaggcggcgtcagctactcagtgagagtgactgcacttgtg
ggggaccgtgagggcgcacctgtctccattgtcgtcaccacgccgcctgaggaggctcca
ccagccctggaggcacttcgtgtagtgcagcgaggggagcactccctgaggctacgctgg
cagccggtgcccggggcacgcggcttccgtctgcgttggcgacctgagggtggccaggaa
cagtcccaggtcctggggccggaactcagcagctacgaactggacgggctggagccagcg
acccactaccgtatatggctgagtgtcttggggacagctggagaagggcccccctcagaa
gtaactgcatacactgagtcacctcgtgtcccaagcactgaactgcgtgttgtagacacc
tcagtcgactcagtgactctggcctggaccccggtgtctggggtatccagctacatccta
tcctggcagccactcagaggccctggccaagaattgcctggggcctcacagacacttccg
gggatctcaagctcccagcaggtgacagggctagagcctggtgtctcctacatattctcc
ctgacacctgtccgggagggtgtacaaggtcctgaggcctcggtcacacagaccccagtg
tgtccccatggcctgatggacgtggtgttcctgctgcataccactcgagacaatgctcat
cgcgcagaggctgtgaagcgagccctggagcatctggtgtctgcacttgggccgcttggg
ccacaggccatccaggttggcctcctgtcctacagtcaccggccctccccactgttctcg
ctgaacagctcctatgaccttggtgtcatccggcagaagatccgcaacatcccctacacg
gacccaagtgggaacaacttgggcacagcagtggttacagctcacagatacctgttggca
ccagatgcccctggacgacgccggcatgtgctgggggtgatggttctactggtggatgag
cccttgagaggtgacatcttcagctctatccgtgaggcccaggctgctgggctcaaagtg
atgatgctgggcctggcaggagctgacccagaacagctgcgtcgcttggtgccaggcata
gactctgtccagaccttcttcgccgtggatgatggtccaagcttggaccgggcagtcagt
agtctggcaacagccctgtgtcagacggctttgaccacccagctacagccagacccttgc
tcggtgcattgtccaaagggccagaagggagaacccggagagatggggctgaaaggacaa
gccgggcctcctggtccccccggcctcccgggcaggatgggtgttcctggcccccaggga
cctcctggaagtaccattgcgaagggtgagaggggcttccctggggcagatgggcctcca
ggcagccctggccgccctggtactcctggaagccccggcccgaagggctccccagggtgg
cccagtcctcgtggagaaccaggagagcgaggacctcgaggcccaaagggggagccggga
gagcctggacgagtcattggaggcgagggcccagggcttcctggacagaaaggggaccct
ggacctccaggtccccctggatctcgtggcccattgggagacccaggaccccgtggtccc
ccaggattttctggaacagctgtgaagggtgagaaaggtgatcgtggggagcggggtccc
cctggaccaggtgatggcagcgttgctttaggggagcctgggctgccgggtcttcctgga
agccgtggaccccaaggctcagttggcccccctggagaaaaaggagaaaagggtgactgt
gaagatggagccccaggcctcccaggacaacctgggaccccgggtgagccgggcctacgg
ggacttcctggagtcactggccccaaaggtgaccaaggactaacaggggccatcggtgag
actggagaaaagggcgaacgtggatcccctggcccagcgggaccacagggtccaccagga
gttgctgggcgtcctggacctgagggtcctgaagggccaccaggacccactggccgccga
ggagagaagggggagcctggtcgccctggggaccccgctgtgggacctgggggtgctgga
gctaaaggagagaagggagacgtagggctccctgggcccaaaggagctaccggagtcaaa
ggggaacggggcccacctggcttggttcttcctggagaccctggccccaagggagaccct
ggagtccggggtcccatcggcctcactggcagagcaggaccgccgggtgactcagggcct
cccggagagacgggagaccctggtcgtcctggttccccaggacccatcggcccccgagga
cgagatggtgaagttggagggaaaggtgacgagggtcccccgggtgaaccaggtttgcct
ggaaaagctggcgagcgtggccttcggggggcacctggaactcgggggcctgtgggtgac
aagggagaccagggagatcctggagaggatggacgaaacgggagccctggaccatctgga
cccaagggtgaccgtggggagccaggtcccccaggaccccctggacggctggtggacacg
ggacttggagtcagagagaagggagagtctggggaccgtggacaggagggtcctcgagga
cccaagggtgaccccggcccccctggagcttctggggagagaggcatcagtggacttcgg
gggcccccaggcccgcagggggacccaggtgttcgaggcccaggaggagaaaagggtgac
cggggcccccctggcctggatggccgcagtggactggatgggaaaccaggaacccctggt
ccgcctgggcagcctggtgctataggcaaggctggggacccagggagagacggactgcct
ggccttcgaggagaacagggccccgctggcccctctggtccccttggagcaccgggaaag
ccaggcaaggatggcaagcctggcctgaatgggaaaaacggaggacctggggaccctgga
gaagatgggaggaagggagagaagggagattcgggcgctcctgggagagaaggtcatgat
ggccccaagggtgagcgaggagctcctggtagccctggactccagggccccccgggcatc
ccagggcaggttggccctcctggccagggtttccctggtgttccaggaggttcgggctcc
aagggtgaccgtggggagactggacccaaaggggaacagggcctcccaggagagcgtggc
ctgagaggagagcctgggagcacggcgaatgtggagcggttgctggaaaatattggcatc
aagacgtccgccctgcgggagatcgtggagagctgggaagagagctctggcagcttcctg
cctgtgcctgaacggcgtcgtggccccaagggggacccaggagagcggggcccaccaggc
aaggagggccccactggcttttctggagaacgcgggctgaagggagatcgtggagacccc
ggccctcagggaccacctggcctggcctttggggagaggggcccccctggacctcccggc
cttgctggggaacctggaaagcctggtatccctgggctcccaggcccggctgggagtgtg
ggagaggcagggagaccaggagagaggggagagcggggagagaaaggagaacgtggagaa
cagggcagagacggccctcctggccttcctggaccccctggcccccctggccccaaggtg
gccatggacgagccaggttctggactctctagagaaccaggaccccctggactcaagggt
gctaagggggagccaggcagtgacggcaaccaaggccccaaaggagacaggggtgagcca
ggcatcaagggagacaggggagaacctggacagaggggtcaaaatggcatcccgggtcta
ccaggagagcgtggcgtggctgggcctgaggggaagccgggtctgcaaggtccaaggggg
acccctggcccaatgggtggccatggagaccctggaccacctggtgccccgggtcttgct
ggccctgcgggaccccagggaccttctggcctgaagggggagcccggagagacaggacca
ccaggacggggcctgcctggacccactggggctgtgggacttcctggcccccctggcgcc
tcaggccttgtgggtcctcagggggcaccaggtttgcctggacaagtgggggagacgggg
aagccgggagtgccaggtcgtgatggtgccagtgggaaggacggagacagaggagcccct
ggcgtgccggggtcaccaggtctgcctggccctgtcggacctaaaggagagcctggaccc
atgggcacccctggacaggctgtggtcgggccccctggagcaaagggagagaagggcacc
cctggaggccttgctgaagacctggtgggagagccgggagccaaaggtgaccgaggactg
ccggggccgcgaggccagaagggtgaagccggccgtgccggggagcctggagatcctggt
gaagatggtcagaaaggggctccaggactcaaaggtcacaagggtgacccaggagttggg
gtccaggggccccctgggccaattggtcctccaggtctaaagggagacttgggccccccc
ggcacccgtggtgctcctggtattgtggggttccccggtcagacaggccctcgaggagag
atgggtcagccgggccccagtggagagcggggtctggcaggccccccagggagagaggga
gccccaggtcccttggggccacgtggaccccttgggctagcgggagcgcctggggcccct
ggactcaaaggagacaagggagacactggagcaggaccgcctggggcccgaggcgagcgt
ggggagccgggtgtccggggtgaagatggccgccccggcctggagggaccccgaggactc
gtgggtcccccaggcagccggggggagcgtggggagaagggtgaccctggaacctcaggg
ctgaagggtgacaagggtgactcagctgtgattatggggcctccggggccacgaggtgcc
aagggggacatgggtgaacgagggcctcggggcatagatggtgacaaaggacctcgggga
gacagtggggaccctggagaaaagggcgccaagggacagcctggagacaagggctcagcc
gggttgctgggagtgcgtggactcacaggacccaagggtgagcctggtgctgcagggatc
cctggtgagccgggatcccgaggaaaagacggagcccctggtgtccgaggagacaaagga
gatgttggcttcatgggtccccggggcctcaagggcgaacagggggttaagggagcctgt
ggccttgatggagagaagggagataagggagaagctggtcccccgggccgcccagggctg
gcaggacgcaaaggagagttgggggagccgggtgttccaggccagtcaggggcccctggg
aaggagggcctgatcggtcccaagggtgaccgcggttttgatgggcagccaggacccaag
ggtgaccagggcgagaaaggggagcgggggcctccaggaattgggggcttcccaggtccc
aggggcagtgatggctctagtggtccccccggaccacctggcagtattggtcccaaaggc
cccgaaggacttcagggccagaagggtgaacgaggtccccctggagagagtgtggtgggg
gcccctggggtccctggaaccccaggagagagaggggagcaggggcggccaggacctgtg
gggccccgcggcgagaagggagaagctgcactgacagaggatgacattcggggccttgtg
cgtcaggagatgattcagcattgcgcctgccagggccagtttatcacatctggatcacga
cccctccctagttacgctgcagacaccgctggcccccagctccacgccgtgcccattctc
cgcgtctcccatgcagaggaggaaggccaggtgccccctgaggatgatgagtacgaatac
tctgagtattccgtggaggaataccaggaccctgaggctccttgggatggcgatgccccg
gacccctgctcgcttccactggacgagggctcctgtactgcctacaccctgcgctggtat
catcgggctgtggcaggtggtgcggaggcctgtcacccctttgtctatggtggctgtgga
gggaatgccaaccgttttgggacccgtgaggcctgtgagcaccgctgcccaccccgggtg
gctcagagccaggggacaggtgctgccgggagcttaggcagatga
DBGET
integrated database retrieval system
