Globicephala melas (long-finned pilot whale): 115859099
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Entry
115859099 CDS
T11080
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gmf04121
]
115859099 (PDZRN3)
Enzymes [BR:
gmf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115859099 (PDZRN3)
Ubiquitin system [BR:
gmf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
115859099 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
Sina_ZnF
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
zf-rbx1
CEP104_ZnF
JmjN
Motif
Other DBs
NCBI-GeneID:
115859099
NCBI-ProteinID:
XP_030723597
LinkDB
All DBs
Position
11:17239485..17486718
Genome browser
AA seq
1068 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQQLPEHLERCDFAPARCRHAGCGQV
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVATPPGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGSSTEGIFVSKIVDSGPAAKDGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPPSESQMVDTGTQT
DITFEHIMALTKMSSPTPPVLDPYLLPEEHPSAHEYYDPNDYIEGIHQEMEREELELEEV
DLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEDNKNFSLLIARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
GVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGDDAPAASPPL
AGQRKLTCSQDTLGSSDLPFSNESFISADCADADYLGIPVDECERFRELLELKCQVKSAS
PYGLYYPGSPLDASKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLKEQYREPWM
LHNSGFRNYNTSVDVRRRELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEMSPDNSLR
RAAEGVGGPGGEGAAGTTEVYGPSPRNLLSITEDPEVGSPDYSPSPEELDPSQALEGKER
KPSDDGSGSPTPSQKLGGGSYLSPFPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQS
QMSLVSMCKDLNSANQSEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGMT
TDDDAVSELKMGRYWSKEERKQHVVKAKEQRRRREFMMQSRLDCLKEQQGADDRKEMNIL
ELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagctggaccgcttcgacggcgacgtggacccggacctgaagtgcgcgttg
tgccacaaggtcctggaggacccgctgaccacgccgtgtggccacgtcttttgcgccggc
tgcgtgctgccctgggtggtgcaggagggcagctgcccggcgcgctgccgcggtcgcctc
tcggccaaggagctcaaccacgtcctgccgctcaagcgcctcatcctcaagctcgacatc
aagtgcgcgcatgcggcgcgcggctgcggccgggtggtcaagctgcaacagctgcccgag
cacctcgagcgctgcgacttcgcgcccgctcgctgccgccacgcgggctgcggccaggtg
ctgctgcggcgcgacgtggaggcgcacatgcgcgacgcgtgcgacgcgcggccggtgggc
cgctgccaggagggctgcgggctgcccctgacgcacggcgagcagcgcgccggcggccac
tgctgcgcgcgggccctgcgggcgcacaacggcgcactgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgcgcgggcaagcgcgagaagtcgctggtggca
cagctggccgccgcccagctggagctgcagatgaccgctctgcgctaccagaagaagttc
accgagtacagcgcacgcctcgactcgctcagccgctgcgtggccacgccacccggcggc
aagggtgaagaaacaaaaagcctgactcttgtcctgcatcgggactccggctccctggga
ttcaatattatcggtggccggccgtgtgtggacaaccaagatggatcgtccactgaagga
atctttgtatccaaaatagttgacagtggacctgcagccaaggacggaggcctgcaaatt
cacgacaggattatcgaggttaatggcaaagacttatccagagcaactcatgaccaggct
gtggaagccttcaagacagctaaggagcccatcgtggtccaggtgttgaggcgaacgcca
cggaccaaaatgttcacgcctccgtcagagtcacagatggtggacacgggaacccaaacg
gacatcaccttcgagcacatcatggctcttaccaagatgtcctcgcccaccccacctgtg
ctggatccctatctcttgcccgaggagcatccctcagcccatgaatactacgatccaaat
gactacattgaaggcatccatcaggagatggagagagaggagctggagctggaggaagtg
gatctctacagaatgaacagccaggacaagctgggcctcacagtatgctaccggacggac
gatgaagatgacattgggatctatataagcgagatcgaccctaacagcatcgcggccaag
gatgggcgcatccgagaaggagaccgcatcatccagattaacgggatagaggtacagaac
cgcgaagaggccgtggcgcttctaaccagtgaagacaacaagaacttttccttgctaatt
gcaaggcccgaactccagctggacgaggggtggatggacgacgacagaaacgactttctg
gacgacctgcacatggacatgctggaagagcagcaccaccaggccatgcagttcactgcc
ggcgtgctgcagcagaagaagcacgaggaagacgggggaaccacagacacggccaccatc
ctgtccaaccagcacgagaaggacagtggcgtgggccggacggacgagagcacgcgcaac
gacgagagctcagagcaggagaacaacggcgacgacgcccccgcggcctccccgccactg
gccgggcagaggaagctcacgtgcagccaggacaccctgggcagcagcgacctgcccttc
agcaacgagtccttcatctcggccgactgcgccgacgccgactacctgggcatcccggtg
gacgagtgcgagcgcttccgcgagctgctggagctcaagtgccaggtgaagagtgccagc
ccctacggcctgtactacccgggcagccccctggacgccagcaagagcgacccggagagc
gtggacaaggagctggagctgctaaacgaggagctgcgcagcatcgagctggagtgcctg
agcatcgtgcgcgcgcacaagatgcagcagctcaaggagcagtaccgcgagccctggatg
ctgcacaacagcggcttccgcaactacaacaccagcgtcgacgtgcgcaggcgcgagctc
tcggacatcaccgagctccccgagaagtccgacaaagacagctcgagcgcgtacaacaca
ggcgagagctgccggagcaccccgctcaccttggagatgtcccccgacaactctctgagg
cgagcggccgagggcgtcggcggccccggcggcgaaggcgccgcggggaccaccgaggtg
tatgggccatccccaaggaatctgctctccatcacggaagatcccgaagtgggctctccg
gactacagcccttctcctgaagagctggaccccagccaggccctggagggcaaggagagg
aaacccagcgacgacggcagcgggagccccacccccagccagaagctgggcggcggctcg
tacctgtcgcccttcccgcactccccctacaaacacgcccacatcccggcgcacgcgcag
cactaccagagctacatgcagctgatccagcagaagtcggccgtggagtacgcgcaaagc
cagatgagcctggtgagcatgtgcaaggacctgaactcggccaaccagtcggagccgaga
atggagtggaaagtgaagatccggagcgacgggacgcgctacatcaccaagcggccggtg
cgggatcgcctgctgcgggagcgcgcgctcaagatccgcgaggagcgcagcggcatgacc
acggacgacgatgcggtgagcgagctgaagatggggcggtactggagcaaggaggagagg
aagcagcacgtggtgaaggccaaggagcagaggcggaggcgcgagttcatgatgcagagc
cggctcgactgcctgaaggagcagcaaggggccgacgacaggaaggagatgaacatcctg
gaactcagccacaaaaagatgatgaagaagaggaataaaaagatatttgataactggatg
acgatccaagaactcttaacccacggcacgaaatctccagacggcactagagtatacaat
tcgttcctatcggtgactactgtataa
DBGET
integrated database retrieval system
