Globicephala melas (long-finned pilot whale): 115860116
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Entry
115860116 CDS
T11080
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115860116 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmf03041
]
115860116 (DDX46)
Enzymes [BR:
gmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115860116 (DDX46)
Spliceosome [BR:
gmf03041
]
Complex A
U2 snRNP components
U2 related factors
115860116 (DDX46)
Complex B
115860116 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
FAM176
Motif
Other DBs
NCBI-GeneID:
115860116
NCBI-ProteinID:
XP_030725443
LinkDB
All DBs
Position
3:111668385..111732788
Genome browser
AA seq
1032 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKAENRSRS
KEKTDSGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEIEGEELDPLDAYMEEVKEEVK
KFNMRSVKGGGGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEQFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
IVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGFAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQ
LAEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRIS
EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNS
YQPTNKGRYKVL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtcacgccactatcggaagcgatcagcatcacggggacgctctggaagt
cgatctagaagtcgctcaccctcagacaaaagaagtaaacgtggagatgacagaaggtct
agaagcagggatagagatagaaggagagagaggtctcgtagcagggataaaagaagatct
cggtcaagagacaggaagcgtctgaggcgttccagaagtagagagagagatcgaagtcga
gagcgaagaagatctcgaagtcgagacaggagacgttcgaggagtagaagccggggccgg
agatcccgatcctccagtcctggcaataaaagcaagaaagctgagaataggtctaggtcc
aaagagaaaacagatagtggggaaagttctaaagagaagaaaaaagacaaagatgacaaa
gaggatgaaaaagaaaaggatgccggtaactttgaccagaataagctagaagaagaaatg
agaaagcgaaaagaaagggtagagaaatggcgggaagaacaacgtaaaaaggccatggaa
aacataggggaactgaaaaaggaaattgaagagatgaaacaagggaaaaagtggagttta
gaagatgatgatgatgatgaagatgatcctgcagaggctgaaaaggaaggaaatgaaata
gagggtgaggagttagatccattagatgcttacatggaagaagtgaaagaggaagtaaaa
aagtttaatatgagaagtgtgaaaggtggtgggggaaatgaaaagaagtctgggccaaca
gtcacaaaagttgtcactgttgtcacaaccaaaaaagcagtcgtagattctgataagaag
aaaggtgagctaatggagaatgaccaggatgccatggagtattcgtcagaggaggaagaa
gttgatcttcagactgcccttacaggttatcagacaaagcagagaaagcttctagaacca
gtggatcatggaaaaattgaatatgaacaattcagaaaaaacttttatgttgaagttcca
gaactggcaaaaatgtctcaagaggaagtgaatgtatttcggttggaaatggagggcatt
attgtcaagggaaaaggttgccccaaaccaattaaatcttgggttcagtgtgggatttct
atgaagatcttaaattctctcaaaaagcatggttatgaaaagcctacgccaatccaaacc
caggcgattcctgctataatgtctggacgagatttgattggtattgccaagacaggaagt
ggaaagaccattgcctttctgttgcctatgtttagacacatcatggatcagaggtcatta
gaagaaggagaggggccaatagctgtcatcatgactccaactcgagaactggctttacaa
attactaaagaatgtaagaagttttcgaagaccttgggccttagagtggtctgtgtttat
ggaggaacaggaatcagtgagcagattgctgagctgaaaagaggtgctgaaattattgtt
tgcacacctggtcgaatgattgacatgttagcagctaacagtggtcgggttacaaatctt
cgaagagtgacttatgttgttttagacgaagcagacagaatgtttgacatgggttttgaa
ccacaggtcatgcgcattgtggataatgttcgtcctgaccgacagacagttatgttttca
gctactttccccagagctatggaggccttggctcgcagaatcctgagtaaacccattgaa
gtgcaggttggaggcagaagtgtggtttgctcagatgtggagcaacaagtgattgtaatc
gaagaagaaaagaaattcttgaagctacttgaacttctaggccattatcaagaatcagga
tctgtcattatatttgtggataagcaggaacatgctgatggtcttctgaaagatttaatg
agagcttcttacccttgcatgtctcttcatggaggcattgatcaatatgacagagatagc
atcataaatgattttaagaatgggacctgcaaacttcttgttgctacgtctgttgctgcc
cgaggcctagatgtgaaacatctgattcttgtagtaaattatagctgccccaaccattat
gaggattatgtgcacagagcaggacggactggaagagcaggcaacaaaggcttcgcctat
actttcatcacagaagatcaggctcggtatgctggtgacataattaaagcccttgaattg
tcagggactgcagtgccacctgatctagagaaactttggagtgatttcaaagatcaacag
aaagctgaagggaaaataattaaaaagagtagtgggttctctggtaagggattcaagttt
gatgaaacagaacaagctttggcaaatgagagaaagaagttacaaaaagctgctcttggt
cttcaagattcggatgatgaggatgctgcagttgatattgatgagcaaattgaaagcatg
tttaattcaaagaagagagtgaaggatatggctgctcctggaacatctagtgttcctgct
ccaactgcaggaaatgctgagaagttagaaattgcaaagagattggctcttagaatcaat
gctcagaagaatttggggattgagtctcaggtagatgtgatgcagcaggccaccaatgca
attcttagaggtggcaccatcctggctcccactgtctctgcaaaaaccattgcagagcaa
cttgctgaaaagatcaatgccaagcttaattatgtgcctttggagaaacaagaagaggag
agacaggatggtggacagaatgaatcttttaagagatatgaagaagaattagagatcaat
gacttcccacagactgctaggtggaaagttacctctaaggaagctctgcagagaatcagt
gaatattctgaagctgcaattacaatcagaggaacatacttcccacctggcaaagaaccc
aaggaaggagagcggaaaatttacttggcaattgaaagtgccaatgaactggctgtgcag
aaagcaaaggcagaaatcaccaggcttataaaagaagaactgatccggctgcaaaattct
taccaaccaacaaataaaggaagatacaaagtcttataa
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