Globicephala melas (long-finned pilot whale): 115860450
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Entry
115860450 CDS
T11080
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X2
KO
K17890
autophagy-related protein 16-1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04136
Autophagy - other
gmf04140
Autophagy - animal
gmf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115860450 (ATG16L1)
04136 Autophagy - other
115860450 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
115860450 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmf04131
]
115860450 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
gmf03029
]
115860450 (ATG16L1)
Membrane trafficking [BR:
gmf04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
115860450 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
115860450 (ATG16L1)
Mitochondrial biogenesis [BR:
gmf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
115860450 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_IFT140_1st
eIF2A
NBCH_WD40
Beta-prop_HPS5
Beta-prop_DCAF12
Tricorn_2nd
Beta-prop_WDR19_1st
Beta-prop_ACSF4
Beta-prop_VPS8
Beta-prop_NWD2_C
Beta-prop_Nup120_160
ZapB
Tricorn_N
Motif
Other DBs
NCBI-GeneID:
115860450
NCBI-ProteinID:
XP_030726147
LinkDB
All DBs
Position
7:complement(6800440..6847106)
Genome browser
AA seq
607 aa
AA seq
DB search
MSSGLRASVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEK
HDIPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DKEMQMNEAKIAECLQTISDLETECLELRTKLQDLERANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPAEQDDDI
EVLVDETSDHAEEASPVRAVSRAAAKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDT
HPGSSKEVRVPTTAMCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKG
SLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN
ARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES
IVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSDWTRV
VFSPDGSYVAAGSAEGSLYIWSVLSGKVEKVLSKHHSSAINAVAWSPAGSHVVSVDKGSK
AVLWSEY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctccgcgcctccgtcttcccccgctggaagcgccacatctcggaggag
ttgaggcgccgggaccggctgcagaggcaggcgttcgaagagatcatcctgcagtataac
aagttgctggaaaagtcagatcttcattcagtgctggcccataagctacaagctgaaaag
catgacataccaaacaggcatgagataagtcctggacatgatggtgcatggaatgatagt
cagctgcaagaaatggcccagctgaggattaaacaccaagaagaactgactgaattacac
aagaaacgtggggagttagctcagttggtgattgacctgaataaccaaatgcagcaaaag
gacaaggagatgcagatgaatgaagccaaaattgcagaatgcttgcagaccatctctgat
ctcgagaccgagtgcctggaactacgcactaagcttcaggaccttgaaagagccaaccag
accctgaaggatgaatatgatgccctgcagatcactttcactgccctggaggagaaactg
aggaagactactgaggagaaccaggagctggtcaccagatggatggctgagaaagcccag
gaagctaatcgcttaaatgcggagaatgagaaggattcaaggaggcggcaagcccggctg
cagaaggagctcgcagaagcagcaaaggaacctctcccagctgagcaggatgatgacatt
gaagtccttgtggatgaaacctccgatcacgctgaggaggcctctccggtgcgggccgtc
agcagagcagccgctaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttgggaggcgctctgtgtcttcctttccagttccccaggataacgtggatact
catcctggctctagtaaagaagtgagggtgccaacgactgcaatgtgtgtcttcgacgct
catgatggggaggtcaatgctgtgcagttcagtccgggttcccggctcctggccacggga
ggcatggatcggagggtgaagctctgggaagtgttcggagacaaatgtgagttcaagggc
tccctgtctggcagtaatgcaggaattacaagcattgaattcgatagtgctggatcttac
ctcttagcagcgtcaaatgattttgcaagccgcatctggactgtggatgactatcggtta
cggcatacactcacgggacacagcggcaaagtgctgtctgccaagttcctgctggacaat
gcgcgtattgtttctggaagtcacgaccggaccctcaaactctgggatctacgcagcaaa
gtctgcataaagacggtatttgccggatccagctgcaatgatattgtctgcacagagcag
tgtgtgatgagtggacattttgacaagaaaattcgtttctgggacatccgatcagagagt
attgtccgagagatggagctcttgggaaagattactgccctggacttaaacccagaaaga
actgaacttctcagctgctcccgagatgacctgctaaaaattattgacctacgaataaat
gccgtcagacagacattcagcgcgccgggcttcaagtgcggctccgactggacgagagtt
gtgttcagccctgacggcagttacgtggcagcaggctcggccgagggctccctctacatc
tggagcgtgctctccgggaaagtggagaaggtcctttcaaagcatcacagctcagcgatc
aacgccgtggcctggtcgcctgccggctcccatgtcgtcagcgtggacaaaggaagcaaa
gctgtgctgtggtcagagtactga
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