Globicephala melas (long-finned pilot whale): 115861102
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Entry
115861102 CDS
T11080
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03440
Homologous recombination
gmf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115861102 (PALB2)
03460 Fanconi anemia pathway
115861102 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmf03400
]
115861102 (PALB2)
DNA repair and recombination proteins [BR:
gmf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
115861102 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
115861102 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
115861102
NCBI-ProteinID:
XP_030727363
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Position
15:20261116..20285435
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AA seq
1204 aa
AA seq
DB search
MKGQLGAACLCLIGTASLLSDASFPPAQFCLVFFFFQLKEKLAFLKREYSKTLARLQRAQ
RAEKFKNSIKRTVEGQDSSLQQEVSTQLTDTEPKNKVSPCDTLQINTHVDKETGEKTPIT
LDLEPESFSPGRIPAEGSRIQKSDDIQEHFPYGVSGPDGKKRQSKLLGRRKKQERTFISQ
ERESFFDIDSLILSGKRLKEQEEINRENPKKPVTEIRTYPSSPKSDIPDSPVPVTGTNVG
SVLILPNAKLQRDVDALLRGNNFPSVTTLPLRVPSVSSSGQHLEHEPPKSNCELTTHSLE
NISPASPVNLETQNKKMTVFTDNPEVNKSISASEQPPRSPNLEADNSCSINELTYDNLVA
NENQNLKEQNHTEMSFKSPNNALGGRNESRLEKEVLSQSKSLSLEVISPVSTENQTHSCT
VLEGLLFPAEYYVRTTRRMSDCQREVALEAVIQSHLDVRKKGFKNKNKESAKKLNVSNEE
TNQSEIKMSDTYAEQLSSKSPQKLLSLTEVNSPAGPTKNDFSGKAVTQPSGRKRKGRRKS
VCTPLLDHHELLLPTSGTSGVNRSKEEVALHRDQNEKAIIHEKEGHCQKEDSLSYSNYVY
LSLDDDAFSSPVHKSETLNLKHLSPFLKITDFQLPDEDFGPLKLEKLKSCSEKLMEPFGS
KIYGEGHLKGGNCVAVEQLTAKQITIEKEDGKEELIILPGKAHPKMPHQKSQPQEKGLSS
SILLFTPVNTVASDDNDRPTADLCSPAFPVLGSTPAFGSQAHGEKVSAEVVGQACSTPQL
SHLKAAVSLASDHKQFWSSPPKLDSSLHVAGREGQPSRDCDSGPQATALPIESSTYKENQ
LRGNMCQELRKHSTEQTEIADVPACDSLNPGTLQLVSKLKNPSGSCSVDVSAVWWEIAGF
RERCIVTACEYVVSLWKPRDTWQWEKIYSWHFAEVPVLQIVLVPDVCNLVCVALGNLEIR
EIRALLCSPDGKSEKQVLLSSGNIKAVLGLTKRRLVSSSGTLCDQQVEIMTFAEDGGSKE
KQFLMHPEETILTFAEVQGMQEALLGTTVMNNIVIWNLKTGQLLKKMHIGDSYQASVCHK
AYSEMGLLFVVLSHPCAKESKLLGSPVFQLIVINPKTTLSVGMMLYCLPQGQAGRFLEGD
VKDHFAAAVLTSGTIAIWDLLLGHCTALLPPVSDQNWSFVKWSGADSYLLAGQKDGNIFV
YRYY
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaagggccagctgggcgccgcatgcttgtgtctgataggcactgcatcccttctctct
gatgcctcctttccacctgctcagttttgtttggtgtttttcttcttccagttgaaggaa
aaattagcattcttgaaaagggaatacagcaagacactggcccgccttcagcgtgcccag
agagctgagaagtttaagaattccattaagagaacagtagaaggacaagattcctcgctc
cagcaggaagtttcaacgcagctaaccgacacagaacctaaaaataaagtatctccttgt
gacacgttgcaaatcaacacccacgtcgataaagaaactggagaaaagacacctatcaca
cttgaccttgagcctgagtcctttagccctggacgaatcccagcagaaggatcacgcata
caaaaatcagatgatatccaagaacattttccgtacggggtcagtggccctgatggtaag
aaaaggcagagtaagctgctagggagaagaaagaaacaggagagaacatttatttcacag
gagagagagtctttctttgatattgattcgctcatactctctggaaaaagactaaaggaa
caggaagaaatcaatagagaaaatcctaagaaacctgtaactgagataagaacttacccg
tcaagtcctaagtctgacattcccgattctccagtaccagttacaggaactaatgtaggg
agtgtattaattctgccaaacgccaaactgcagagagatgttgatgcactcttaagagga
aataatttccccagcgtgactactcttcctttgcgtgttccatcagtcagcagtagtggt
cagcacctcgagcatgagcctcctaaaagtaactgtgaacttactactcacagtttagaa
aacattagccctgcttcgcctgtaaacttagagacacaaaacaaaaaaatgactgtcttt
acagataacccagaggtaaacaaaagtataagtgcaagtgagcagccgcctagaagtcct
aacttggaggcagataattcatgttctataaatgaactcacctacgataacttagtggca
aatgaaaaccaaaacttaaaagaacaaaatcacacagagatgtcttttaaatctcccaat
aatgctcttggtggtagaaatgaaagtcgtctggaaaaagaagttctaagtcagtctaag
agtcttagcctagaagtaatttctcccgtttctacagaaaatcaaacacattcttgcaca
gtgcttgaaggccttctatttcctgcagagtattatgtcagaacaacacgacgcatgtca
gattgccagagggaagtagccctggaggctgtaatacaaagtcatttggatgtcagaaaa
aagggctttaaaaataaaaataaggaatctgctaaaaagttaaacgtttccaatgaagaa
actaaccaaagtgaaattaagatgtcggacacgtacgcagaacaactaagttcaaaaagt
cctcagaaacttctctcgttaactgaagtcaactctcccgctggccccactaaaaatgac
ttttctgggaaggcggttacccagccatctggtagaaaacgcaaaggaagaagaaagtca
gtctgcacccctctgttagatcaccatgaactacttttgccaacttctggcacatcaggt
gttaataggtccaaggaagaagttgccttgcacagagatcagaatgaaaaagcaattatt
catgagaaggaaggtcattgtcaaaaagaggactccctttcttacagtaattacgtgtat
ttatctttggatgatgatgctttcagttctccagttcataagagtgaaacgctaaattta
aagcatctgtcgccttttctcaaaatcacagacttccagttacctgatgaagacttcggg
cctcttaagcttgaaaaactgaagtcttgctcagaaaagctgatggagccttttggatca
aaaatatatggagagggacatcttaaagggggaaattgtgttgctgtggagcaactgacc
gctaaacaaatcactatagagaaggaggatgggaaagaggaactgatcatcctgccagga
aaggcacatcctaaaatgccacaccaaaaaagccagccgcaggagaagggcctttcttca
tccattttacttttcactcctgtaaatactgttgcatctgatgataatgacagaccgaca
gcagacctatgctcacctgctttccccgtcttaggctctactccagcttttggctcccaa
gcccatggagaaaaggtgtctgcagaggttgttggacaagcttgctctacaccccagctt
tctcacttaaaagccgcagtcagccttgctagtgaccataaacaattttggagcagccca
ccaaaattagatagcagcctgcatgtggcaggaagggaaggacagccttcccgtgactgt
gactctggtccgcaagcaacagctctacccatcgagtcatcaacctacaaagaaaatcag
ctccgtggaaacatgtgccaggaattacggaaacattccactgaacagactgaaatagca
gacgttcctgcttgtgatagcttaaacccaggcaccctacaattggtttcaaagttaaag
aatccttcaggttcctgttctgtggatgtgagtgccgtgtggtgggaaatagctggtttc
agagaacggtgtatcgtaactgcttgtgaatacgtagtttctctttggaaacctcgggat
acttggcagtgggaaaagatttattcctggcacttcgcagaggtcccagtattacagata
gttctagtgcctgatgtttgtaatcttgtgtgtgtggctttgggaaacttggaaatcaga
gaaatcagggcactactttgttctcctgatggtaaaagtgaaaagcaagtgctcctgagt
tctggaaatataaaagctgtgcttggcctgacaaagaggaggctagtcagtagcagtggg
accctttgtgatcaacaagtagaaatcatgacgtttgcagaagatggaggaagcaaagaa
aaacagtttttgatgcaccctgaagagactatactaacttttgctgaggttcaagggatg
caggaagctctgcttggtaccactgtaatgaacaacattgttatttggaatttaaaaact
ggtcaactcctgaaaaagatgcacattggtgattcctaccaagcttcagtctgtcacaaa
gcttattctgaaatggggctcctgtttgttgttctgagtcacccttgtgccaaagagagc
aagttgttgggaagccctgtgtttcagctgattgtgattaacccaaagacgaccctgagt
gtgggcatgatgctctactgccttcctcaagggcaggctggaaggttcctggaaggtgac
gtgaaagatcattttgcagcagcagtattaacttctggaaccattgccatttgggattta
cttctaggtcattgcactgctctccttccacctgtctctgaccagaactggtcttttgtt
aaatggtcaggtgcagattcttatttgctggctggacaaaaagatggaaatatatttgta
taccgctactactga
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