KEGG   Globicephala melas (long-finned pilot whale): 115861340
Entry
115861340         CDS       T11080                                 
Symbol
POLR2J
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
gmf  Globicephala melas (long-finned pilot whale)
Pathway
gmf03020  RNA polymerase
gmf03420  Nucleotide excision repair
gmf05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:gmf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    115861340 (POLR2J)
  09124 Replication and repair
   03420 Nucleotide excision repair
    115861340 (POLR2J)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    115861340 (POLR2J)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gmf03021]
    115861340 (POLR2J)
   03400 DNA repair and recombination proteins [BR:gmf03400]
    115861340 (POLR2J)
Transcription machinery [BR:gmf03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     115861340 (POLR2J)
DNA repair and recombination proteins [BR:gmf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      115861340 (POLR2J)
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L SHNi-TPR
Other DBs
NCBI-GeneID: 115861340
NCBI-ProteinID: XP_030727942
LinkDB
Position
15:complement(8243412..8249752)
AA seq 117 aa
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
NT seq 354 nt   +upstreamnt  +downstreamnt
atgaacgcgcctcccgccttcgagtcgttcttgctcttcgagggcgagaagaagatcacc
attaacaaggacaccaaggtacccaatgcctgtttgttcaccatcaacaaggaagaccat
acgctaggaaacatcattaaatcgcagctgctgaaggacccacaggtgctgtttgctggc
tacaaagtcccccaccccttggaacacaagatcatcatccgcgtgcagaccacaccggac
tacagcccccaggaggccttcaccaacgccatcacagacctcatcagcgagctctccctg
ctggaagagcgattccgggtggccatcaaagacaagcaagaaggaatcgagtag

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