Globicephala melas (long-finned pilot whale): 115862011
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Entry
115862011 CDS
T11080
Symbol
TRPC1
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04360
Axon guidance
gmf04724
Glutamatergic synapse
gmf04726
Serotonergic synapse
gmf04929
GnRH secretion
gmf04972
Pancreatic secretion
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
115862011 (TRPC1)
09154 Digestive system
04972 Pancreatic secretion
115862011 (TRPC1)
09156 Nervous system
04724 Glutamatergic synapse
115862011 (TRPC1)
04726 Serotonergic synapse
115862011 (TRPC1)
09158 Development and regeneration
04360 Axon guidance
115862011 (TRPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gmf04040
]
115862011 (TRPC1)
Ion channels [BR:
gmf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
115862011 (TRPC1)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
MTR4-like_stalk
RIN1
Motif
Other DBs
NCBI-GeneID:
115862011
NCBI-ProteinID:
XP_030729161
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Position
4:complement(122725633..122789560)
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AA seq
794 aa
AA seq
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MMAALYPNTDLSGASSSSLPSSPSSSSSPNEVMALKDVREVKEENTLNEKLFLLACDKGD
YYMVKKILEENSSGDLNINCVDVLGRNAVTITIENENLDILQLLLDYGCQSADALLVAID
SEVVGAVDILLNHRPKRSSRPTIVKLMERIQNPEYSTTMDVAPVILAAHRNNYEILTMLL
KQDVSLPKPHAVGCECTLCSAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPILRAFE
LSADLKELSLVEVEFRNDYEELARQCKMFAKDLLAQARNSRELEVILNHTSSDEPLDKRG
LLEERMNLSRLKLAIKYNQKEFVSQSNCQQFLNTVWFGQMSGYRRKPTCKKIMTVLTVGM
FWPVLSLCYLIAPKSQFGRIIHTPFMKFIIHGASYFTFLLLLNLYSLVYNEDKKNTMGPA
LERIDYLLILWIIGMIWSDIKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKVVAHNK
FHDFADRKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQDFGK
FLGMFLLVLFSFTIGLTQLYDKDYTPKEQKDCVGIFCEQQSNDTFHSFIGTCFALFWYIF
SLAHVAIFVTRFSYGEELQSFVGAVIVGTYNVVVVIVLTKLLVAMLHKSFQLIANHEDKE
WKFARAKLWLSYFDDKCTLPPPFNIIPSPKTICYMISSLSKWICSHTSKGKVKRQNSLKE
WRNLKQKRDENYQKVMCCLVHRYLTSMRQKMQSTDQATVENLNELRQDLSKFRNEIRDLL
GFRTSKYAMFYPRN
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggccctgtacccgaacacggacctttcgggcgcctcctcctcctccctgcct
tcctccccatcctcctcttcgtcgccgaacgaggtgatggcgctgaaggatgtgcgggag
gtgaaggaggagaacaccctgaatgagaagcttttcttgctggcgtgcgacaagggtgac
tattatatggttaaaaagattttggaggaaaacagttcaggtgacttgaacataaattgc
gtagatgtgcttgggaggaatgctgttaccataactattgaaaacgaaaacttggatata
ctgcagcttcttttggactacggttgtcagtccgcagatgcacttttggtggcaatcgac
tctgaagtagtgggagctgttgatatactacttaatcatcgaccaaaacgatcatcaaga
ccaactatagtaaaactaatggagcgaattcagaatcctgagtattcaacaactatggat
gttgcacctgtcattttagctgctcatcgtaacaactatgaaattcttacaatgctgtta
aaacaggatgtatctctacctaagccccatgcggttggctgtgaatgtacattgtgttct
gcaaaaaacaaaaaggacagcctccgacattccaggtttcgtcttgatatatatcgctgc
ttggccagtccagctttaataatgttaacagaggaggatccaattctgcgagcatttgaa
cttagtgctgatttaaaagaactaagccttgtggaggtggaattcaggaatgattatgag
gaactagcccggcagtgtaaaatgtttgctaaagatttacttgcacaagcccggaattct
cgcgaattagaagttatcctaaaccatacatctagtgatgagcctcttgacaaacgggga
ctactagaagaaagaatgaatttaagtcgtctaaaacttgctatcaaatataaccaaaag
gagtttgtctcccagtccaactgtcagcagttcctgaacactgtttggtttggacagatg
tcaggttaccgacgtaagcctacctgtaagaagataatgactgtgttgacagttggcatg
ttttggccagttttgtcactttgttatttgatagctcccaaatctcagtttggcagaatt
attcacacaccttttatgaaatttattattcatggagcatcatattttacatttctgcta
ttattaaacctatactctcttgtctacaatgaagataagaaaaacacaatggggccagcc
cttgaaagaatagactatcttcttatactgtggattattgggatgatttggtcagacatt
aaaagactctggtatgaagggttggaagactttttagaagaatcacgtaatcaactcagt
tttgtcatgaattcactttatttggcaacctttgccctcaaagtggttgctcacaacaag
tttcatgattttgctgatcggaaggactgggatgcattccatcctacactggtggcagaa
gggctttttgcatttgccaatgttctgagttatcttcgtctcttttttatgtatacaaca
agctctatcttgggtccattacagatttcaatgggacagatgttacaagattttggaaaa
tttcttggaatgtttcttcttgttttgttttctttcacaattggactgacacaactgtat
gataaagactatactccaaaagaacagaaggactgtgtaggcatcttctgtgaacagcaa
agcaatgataccttccattcgttcatcggcacttgctttgctttgttctggtatattttc
tccttagcacatgtggcaatctttgtcacaagatttagctacggagaagaattacagtcc
ttcgtcggagctgttattgttgggacatacaatgttgtggttgtgattgtgcttactaag
ctgctggtggcaatgcttcataaaagttttcagttgatagcaaatcatgaagacaaagaa
tggaagtttgctcgagcaaagttgtggcttagctactttgatgacaaatgtacattaccc
ccacctttcaacatcattccttcgccaaagactatctgctatatgattagtagcctcagt
aaatggatttgctctcatacatcaaaaggcaaggttaaacggcagaacagcttaaaggaa
tggagaaatttgaagcaaaagagagatgaaaactaccaaaaagtgatgtgctgtttagtg
catcgttacttgacttccatgagacaaaagatgcaaagtacagatcaggcaactgtggaa
aatctaaatgaactgcgccaagatctgtcaaaattccgaaatgaaataagggatttactt
ggctttcggacttctaaatatgctatgttttatccaagaaattag
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