Globicephala melas (long-finned pilot whale): 115862045
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Entry
115862045 CDS
T11080
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X2
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03082
ATP-dependent chromatin remodeling
gmf04714
Thermogenesis
gmf05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115862045 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
115862045 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
115862045 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmf03000
]
115862045 (ARID1A)
03021 Transcription machinery [BR:
gmf03021
]
115862045 (ARID1A)
03036 Chromosome and associated proteins [BR:
gmf03036
]
115862045 (ARID1A)
Transcription factors [BR:
gmf03000
]
Eukaryotic type
Helix-turn-helix
ARID
115862045 (ARID1A)
Transcription machinery [BR:
gmf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115862045 (ARID1A)
Chromosome and associated proteins [BR:
gmf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115862045 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
115862045
NCBI-ProteinID:
XP_030729237
LinkDB
All DBs
Position
1:complement(167133269..167206883)
Genome browser
AA seq
2284 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAVAAERGEMKAAAGQESEGPA
VGPPQPLGKELQDGAESNGGGGGGGAGGGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPG
GGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLA
ALQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPGS
GAAAATGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPTAAGGGTPQPTATPTLNQLLTS
PSSARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQRSHHA
PMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQ
PYGSQTPQRYPMTMQGRAQSTMGGLSYAQQIPPYGQPGPSGYGQQGQAPYYNQQSPHPQQ
QQQPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPTPYPTQQST
TQQHPQSQPPYSQPQAQSPYQQPPPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPPP
QELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPG
VSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVP
GNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQ
MHTGMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPMGAGGQ
MHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQETAVA
MHVAANSIQNRPPGYPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAG
MAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPER
KMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNL
NVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGS
MQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMRSNSVGIQDAFPDGSDPTFQK
RNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYS
RAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTAAPQPNLMPSNPDSGMYSP
SRYPAQPQPQPQPQQQRHDSYGNQFSAQGTPSSSPFPSQQTTMYQQQQQNYKRPMDGTYG
PPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPAT
AATERRPAGGPQNQFPFQFGRDRVSAPPGSSAQQNMPPQMMGGPIQASAEVAQQGTMWQG
RNDMTYSYANRQSTGSAPQGAAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSAP
VPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPV
PASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGL
LAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPG
QRTLLDPGRFSKASSPAPMEGVEEEDLLGPKLEEEEEEEVIENDEEMAFAGKDKAASENS
EEKLISKFDRLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFES
KTELLPSRPHVPCPPVTRKYVTAVEGTPGTTEQEGPPTDGPPEKRITATMDDMLSTRSST
LTEEGAKSVEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRC
VCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGV
SCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQD
PFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNP
VCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNP
PFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFL
IGQS
NT seq
6855 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagcggagcagcagcagcgggaggaggcggggggcgaggcggcggcg
gtagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggccccgcc
gtggggccgccgcagccactgggaaaagagctgcaggacggggctgagagcaatgggggt
ggcggcggcggcggagccggcggcggtggcgggcccggcgcggagccggacctgaagaac
tcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgcccggc
ggcggtggtggcggcagcagcgacggggtgggggcgcctcctcactcagccgcggccgcc
ttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtcgcc
gccgcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggca
gcgctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccagcagaac
tcgcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcc
taccccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccggggtcc
ggcgcggcggcggccaccggctccaagccgcctccctcctccagcgcctccgcctcctcg
tcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggccccacagcg
gccggagggggaacccctcagcccaccgccacccccaccctcaaccaactgctcacgtcg
cccagctcggcccggggctaccagggctaccccgggggcgactacggcggcgggccccag
gacgggggcgccggcaagggcccggcggacatggcctcgcagtgctggggggcggctgct
gctgcggcggcggcggcggcggccgcctcgggaggagcccaacaaaggagccaccacgcg
cccatgagccccgggagcagcggcggcgggggtcagccgctcgcccggaccccgcagcca
tccagtccaatggatcagatgggcaagatgagacctcagccatatggcgggactaaccca
tactcgcaacaacagggacctccatcaggaccgcagcaaggacatgggtacccagggcag
ccatatgggtcccagaccccacagcggtacccgatgaccatgcagggccgagcgcagagt
accatgggcggcctctcttatgcacagcagattccaccttatggacagccaggccccagc
gggtatggtcagcagggccaggctccatattacaaccagcaaagccctcacccccagcag
cagcagcagccctactcccagcagccaccatcccagacccctcacgcccagccttcatat
cagcagcagcctcagtctcagccaccgcagctccagtcctctcagcctccgtattcccag
cagccatcccagcccccgcatcagcagtccccaaccccgtaccccacccagcagtctacc
acccagcagcacccccagagccagcccccctactcacagccgcaggcacagtctccttac
cagcagccgccacctcagcagccagcatcctcgacgctttcccagcaggctgcgtaccct
cagccccagtctcagcagtcacagcaaactgcctattctcagcagcgcttccctccacca
caggagttatctcaagattcatttgggtctcaggcgtcctcagccccctcaatgacctcc
agtaagggagggcaagaagatatgaacctgagtcttcagtcaagaccttcaagcttgcct
gatctgtctggttcaatagacgatctccccatggggacagaaggagctctgagccctgga
gtgagcacatcagggatttcaagcagccaaggggagcagagtaatccagctcagtctcct
ttttctccccatacctcccctcacctgcctggcatccgaggcccctccccgtccccagtt
ggctctcctgccagtgttgctcagtctcgctcaggaccactctcgcctgctgcagtgcca
ggcaaccagatgccacctcggccacccagtggccagtcggacagcatcatgcatccttct
atgaaccaatcaagcattgcccaagatcgaggttacatgcagaggaacccccagatgccc
cagtacagttccccccagcccgggtcggccttatctccacgtcagccttctggaggacag
atgcacacaggcatgggctcctaccagcagaactccatggggagctatggtccccaggga
agtcagtacggcccacagggaggctaccccaggcagccaaactataatgccttgcccaat
gctaactaccccagtgcaggcatggctggaagcatgaaccctatgggtgctggaggtcag
atgcatgggcagcctggcatcccaccttatggcacactccctccagggagaatgagtcat
gcctccatgggcaaccggccttatggccctaacatggccaatatgccacctcaggttggg
tcagggatgtgtcccccaccagggggtatgaaccggaaaactcaagaaactgctgtcgcc
atgcacgttgctgccaactctatccagaacaggccaccaggctaccccaatatgaatcaa
gggggcataatgggaactggacctccctatggacaagggattaatagtatggctggcatg
atcaaccctcagggacccccatatcccatgggtggaaccatggctaacaattcagcaggg
atggcagccagcccagagatgatgggtcttggggatgtcaagttaactccagccaccaaa
atgaacaacaaggcagatgggacacccaagacggaatctaaatccaagaaatccagttct
tctactacaaccaatgagaagatcaccaagttgtatgagctgggtggtgagcctgagagg
aagatgtgggtggaccgttatctggccttcacggaggagaaggccatgggcatgacaaat
ctgcctgctgtgggtaggaaacctctggacctgtaccgcctctatgtgtctgtgaaggaa
attggtggattgactcaggtcaacaagaacaaaaaatggcgggaacttgcgaccaacctc
aatgtcggcacctcaagcagtgctgccagctccttgaaaaagcagtacatccaatgtctc
tatgcctttgagtgcaagatcgaacggggagaagaccctcccccagacatctttgcagct
gctgattccaagaagtcccagcccaagatccagcctccctctcctgcgggatcagggtca
atgcaggggccacagacacctcagtcaaccagcagttccatggcagaaggaggagacctg
aagccaccaactccagcatccacaccacacagccagatcccccccttgccaggcatgagg
agcaattcggtcgggatccaggatgcctttcctgatggaagtgaccccacattccaaaag
cggaattccatgactccaaaccctgggtaccagcccagtatgaatacctctgacatgatg
gggcgcatgtcctacgagccaaataaggatccttatggcagcatgaggaaagctccgggg
agtgatcccttcatgtcctcaggtcagggccctaacggcgggatgggggacccctacagt
cgagctgccggccctgggctgggaaatgtggcgatgggaccgcgacagcactatccctat
ggaggtccttatgacagagtgaggacggagcccggaataggacccgagggaaacatgggc
actgcagccccacagccgaatctcatgccttccaacccagactcggggatgtattctcct
agccgttaccccgcacagccgcagccgcagccgcagccgcagcagcaacgacatgattcc
tatggcaatcagttctccgctcaaggcaccccttccagcagccccttccccagccagcag
accacgatgtatcagcagcagcagcagaattacaagcggccgatggatggcacatatggc
cctcctgccaagaggcacgaaggggagatgtacagtgtgccgtacagcacggggcagggg
cagccccagcagcagcagttgcccccagcccagccccagcctgccagccagcaacaagct
gctcagccttcccctcagcaagatgtgtacaaccagtatggcaatgcctatcctgccact
gctgctactgagcgccgaccagcaggcggcccccagaaccagtttccattccagtttggc
cgagaccgtgtctcagcaccccctggctccagtgcccagcagaacatgccaccgcagatg
atgggcggccccatacaggcatcggctgaggttgctcagcaaggcaccatgtggcagggg
cgtaatgacatgacctacagttacgccaacaggcagagcacgggctctgccccgcaaggt
gctgcctatcatggcgtgaaccgaacagatgaaatgctgcacacggatcagagagccaac
catgaaggcccatggccttcccatggcacacgccagcccccatatggtccttctgccccc
gtgccccccatgacaaggccccctccatccaactaccagcccccaccaagcatgcagaat
cacattcctcaggtatccagccctgctcccctgccccggccaatggagaaccgcacctct
cctagcaagtctccattcctgcactccgggatgaagatgcagaaggcaggtcccccagta
cctgcctcacacatagcacctgcccctgtgcagccccctatgattcggcgggacatcacc
ttcccacctggctctgttgaagccacacagcctgtgttgaagcagaggaggcggctcacg
atgaaagacatcggaaccccggaggcatggcgggtaatgatgtccctcaagtctgggctg
ctggcagagagcacgtgggcattagacaccattaacatcctgctgtatgatgacaacagc
atcatgactttcaacctcagtcagctcccagggttgctagagctccttgtggaatatttc
cgacgttgcctgattgagatctttggcattttaaaggagtatgaggtgggtgacccagga
cagagaacactactggaccctgggagattcagtaaagcgtctagtccggctcctatggag
ggggtggaggaggaagaccttctaggtcccaaactagaggaggaagaagaggaggaagta
attgaaaatgatgaggagatggcctttgcgggcaaggacaaagccgcctcagagaatagt
gaggagaaactgattagtaagtttgacaggcttccagtaaagatcgtgcaaaagaatgac
ccgttcgtggtggactgctcagataagcttgggcgcgtgcaggagtttgacagtggcttg
ctgcactggcggattggtgggggggacaccactgagcatatccagacccactttgagagc
aaaacagagctgctgccttcccggcctcatgtaccctgcccaccagtcactcggaagtat
gtcacagcagtagagggtacaccagggacaacagagcaggagggccccccgactgatggc
cctccagaaaaacggatcacagccactatggatgacatgttgtccacccggtctagcaca
ctgaccgaggagggagctaagagtgtagaggccaccaaggaaagcagcaagtttccattt
ggcatcagcccagcacagagccatcggaacatcaagatcctagaggatgaaccccacagt
aaagatgagaccccactgtgtacccttctggactggcaggattcccttgccaaacgctgc
gtctgtgtctccaataccatccgaagtctgtcatttgtgccaggcaacgactttgagatg
tccaagcacccggggctgctgctcatcctgggcaagctgatccttctgcaccacaagcac
ccggaacggaagcaggcgccactgacttacgagaaggaggaggagcaggaccaaggggtg
agctgcaacaaagtggagtggtggtgggactgcttggagatgcttcgggaaaacaccttg
gtcacgctcgccaacatttcggggcagttggacctctccccatacccagagagcatttgc
ctgcctgtcctggatggactcctacactgggcagtctgcccttcagctgaagcccaggac
cccttctccaccctgggccccaacgccgtcctctccccacagagactggtcttggaaacc
ctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccacaccccccttc
agccgcctggagaagttgtacagcaccatggtgcgcttcctcagtgaccgaaagaacccg
gtgtgccgggagatggctgtggtactgctagccaacctggcacagggtgacagcctggcg
gcccgtgccattgcagtgcagaaaggcagcatcggcaacctcctgggcttcctggaggat
agccttgctgccacacagttccagcagagccaggccagcctgctccacatgcagaacccg
ccctttgagccaactagtgtggacatgatgcgacgggctgcccgtgcgctgctggccctg
gccaaggtggacgagaaccactcggagttcacgctgtatgagtcacggctgttggacatc
tcggtatcaccgttgatgaactcattggtttcacaagtcatttgcgatgtactgtttttg
attggccagtcatga
DBGET
integrated database retrieval system
