Globicephala melas (long-finned pilot whale): 115862399
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Entry
115862399 CDS
T11080
Symbol
EXOSC5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115862399 (EXOSC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115862399 (EXOSC5)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115862399 (EXOSC5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
115862399
NCBI-ProteinID:
XP_030730025
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All DBs
Position
19:11896272..11904165
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AA seq
235 aa
AA seq
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MEGVMQTETKIRAESGIESGPRGPGCSLRNFACEQNLLSRPDGSASFLQGDTSVLAGVYG
PAEVKVSKEIFNKATLEVTLRPKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVL
QVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLLLDPTAKQEKEARAV
LTFALDSVERKLLMSTTKGLYSDAELQQCLAAAQAASQHVFRFYRESLQRRYSKS
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atggagggagtgatgcagactgagactaagatccgcgctgagtctggaatagagtccggc
cctcggggtcccggttgtagcctccggaactttgcctgcgaacagaatttgttgtcccgg
cctgatggctcggcctctttcctgcaaggcgatacctccgtcctggcaggcgtgtatggg
ccagcagaggtgaaagtcagcaaagagatcttcaacaaggccacactggaggtgaccctg
aggccgaagatcggtctgcctggcgtagcggagaagagccgggagcggctgatcagaaac
acgtgtgaagcggtggtgctgggagctctgcacccccgcacctccataaccgtggtgctg
caggtcgtcagcgatgctggctctctcctggcctgttgcctgaatgccgcctgcatggca
ctggtggacgcaggtgtgcccatgcgggccctcttctgtggggtcacctgtgctctggac
tctgatgggaccctcctgctggaccccacagccaagcaagaaaaggaggcccgggcagtc
ctgacctttgcacttgacagcgtggaacggaagctgctgatgtccaccactaaggggctc
tactctgatgctgagctccagcagtgcctggctgcagcccaggctgcctcccagcacgtc
ttccgcttctaccgggaatctctgcagaggcgttactcgaagagctga
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