Globicephala melas (long-finned pilot whale): 115862437
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Entry
115862437 CDS
T11080
Symbol
PSMC4
Name
(RefSeq) 26S proteasome regulatory subunit 6B
KO
K03063
26S proteasome regulatory subunit T3
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03050
Proteasome
gmf05010
Alzheimer disease
gmf05012
Parkinson disease
gmf05014
Amyotrophic lateral sclerosis
gmf05016
Huntington disease
gmf05017
Spinocerebellar ataxia
gmf05020
Prion disease
gmf05022
Pathways of neurodegeneration - multiple diseases
gmf05169
Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03050 Proteasome
115862437 (PSMC4)
09160 Human Diseases
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
115862437 (PSMC4)
09164 Neurodegenerative disease
05010 Alzheimer disease
115862437 (PSMC4)
05012 Parkinson disease
115862437 (PSMC4)
05014 Amyotrophic lateral sclerosis
115862437 (PSMC4)
05016 Huntington disease
115862437 (PSMC4)
05017 Spinocerebellar ataxia
115862437 (PSMC4)
05020 Prion disease
115862437 (PSMC4)
05022 Pathways of neurodegeneration - multiple diseases
115862437 (PSMC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
gmf03051
]
115862437 (PSMC4)
Proteasome [BR:
gmf03051
]
Eukaryotic proteasome
Regulatory particles
PA700 (19S proteasome)
ATPase subunits
115862437 (PSMC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Prot_ATP_ID_OB_C
AAA_5
AAA_2
AAA_lid_3
AAA_16
RuvB_N
AAA_22
nSTAND3
DUF815
NPHP3_N
AAA_28
RNA_helicase
Mg_chelatase
AAA_14
TIP49
NTPase_1
ATPase_2
NACHT
AAA_3
IstB_IS21
AAA_7
TsaE
AAA_18
AAA_33
Parvo_NS1
AAA_lid_PRS2_C
AAA_17
AAA_25
NB-ARC
AAA_24
ABC_tran
DUF3450
Motif
Other DBs
NCBI-GeneID:
115862437
NCBI-ProteinID:
XP_030730119
LinkDB
All DBs
Position
19:complement(12610744..12619214)
Genome browser
AA seq
418 aa
AA seq
DB search
MEEIGILVEKAQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEY
IKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTID
RELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREA
VELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL
GEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD
QNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDL
EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggaggagataggcatcctggtggagaaagctcaggatgagatcccagccctgtctgtg
tcacggccccagactggcctgtccttcctggggcctgagcctgaggaccttgaggacctg
tacagccgctacaagaagctgcagcaagagctggagttcctggaggtgcaggaggagtac
atcaaggatgagcaaaagaacctgaagaaggaattcctccatgcccaggaggaggtgaag
cgaatccagagcatcccactggttattgggcagtttctggaggctgtggatcagaataca
gccatcgtgggctccaccacaggctccaactactatgtgcgcatcctgagcaccatcgac
cgggagctgctcaagcccaacgcctcggtggccctccacaagcacagcaacgccctggtg
gacgtgctgcctcctgaggccgacagcagcatcatgatgctcacctcagatcagaagcca
gacgtgatgtacgcggacatcgggggcatggacatccagaagcaggaggtgcgggaggcc
gtggagctcccccttacgcactttgagctctacaagcagatcggcatcgaccctccccga
ggcgtcctcatgtatggcccgcccggctgcgggaagaccatgttggcaaaggctgtggct
catcacacgacagctgcattcatccgagttgtgggctcagagtttgtacagaagtacctg
ggtgagggccctcgcatggtccgggatgtgttccgcctggccaaggagaacgcacctgcc
atcatcttcatagatgagattgatgccatcgcaaccaagagattcgatgcccagacaggg
gctgacagggaggttcagagaatcctgctggagctactgaatcaaatggatggattcgac
cagaacgtcaacgtcaaggtgatcatggccacaaacagagcagacaccctggatcctgct
ctgctgcggccgggacgccttgaccgtaaaattgaatttccactccctgaccgccgccag
aagagattgattttctccactatcaccagcaagatgaacctctctgaggaggttgacttg
gaagattatgtggcccgaccagataagatttcaggagctgatatcaactccatctgtcag
gagagcgggatgttggctgtccgagagaaccgctacattgttctggccaaggacttcgag
aaagcatacaagacagtcatcaagaaggacgaacaggagcatgagttttacaagtga
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