Globicephala melas (long-finned pilot whale): 115862447
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Entry
115862447 CDS
T11080
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115862447 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmf03021
]
115862447 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115862447 (SUPT5H)
Transcription machinery [BR:
gmf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115862447 (SUPT5H)
RNA polymerase I system
115862447 (SUPT5H)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
115862447 (SUPT5H)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW
KOW4_SPT5
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
115862447
NCBI-ProteinID:
XP_030730125
LinkDB
All DBs
Position
19:complement(12874651..12901482)
Genome browser
AA seq
1087 aa
AA seq
DB search
MSDSEDSNFSEEEDSERSSDGEEAEVEEERRSAAGSEKEEEPEEEEEEEEEEEYDEEEEE
EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
LGKLLEA
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaagacagcaacttctccgaggaggaggacagcgagcgcagcagtgac
ggcgaggaggccgaggtagaggaggagcggcggagtgcagcaggtagtgagaaggaggaa
gagcctgaggaagaagaggaggaggaagaggaggaggaatatgatgaggaagaggaggag
gaagatgatgaccggccccccaagaaaccccgccacggcggcttcattctggatgaggct
gatgtggacgatgagtatgaggatgaggaccagtgggaggatggagcagaggacatcctg
gagaaagaagagattgaagcctccaatatcgacaatgttgtcttggatgaagaccgttcc
ggggctcgccgcctacaaaacctctggagggaccagcgagaagaagaactgggcgagtat
tacatgaagaaatacgcaaagtcatctgtgggagagacggtatatggaggatccgatgag
ctctcggatgacatcacccagcagcagctgctcccgggagtcaaggatcccaatctgtgg
actgtcaaatgtaagattggggaggaacgggccacagccatttccttgatgcgcaagttc
attgcataccagtttacagacacgcccctgcagattaagtcggtagtggcaccagagcat
gtgaagggctacatctacgtggaggcctacaagcagacccatgtgaagcaggccatcgag
ggcgtgggcaacctgcggcttggctactggaaccagcagatggtgcccatcaaggagatg
acagatgtgctcaaagtggtgaaggaggtggccaacctgaaaccaaaatcctgggtccgc
ctcaagcggggcatctataaggacgacatcgctcaggtggattacgtggagcccagccaa
aacaccatctccctaaagatgatcccacgcattgactacgaccgcatcaaggcccgaatg
agcttgaaagactggtttgccaaaaggaagaagtttaagcggcctccacagaggctattt
gatgcagaaaagatcaggtccctggggggtgatgttgcctctgatggtgacttcctcatc
ttcgaggggaaccgttacagccggaagggctttctgttcaagagctttgccatgtctgct
gtgatcacggagggtgtgaagcccacactctctgagctggagaaatttgaggaccagcca
gagggcatcgacctcgaggtggtgactgaaagcacagggaaggagcgggaacacaacttc
caacctggggacaacgtggaggtgtgtgagggtgagctcatcaacctgcagggcaagatc
ctcagcgtggatggcaacaagatcaccataatgcccaagcacgaggacctcaaggacatg
ctggagttcccggcccaggaacttcggaagtacttcaagatgggggaccacgtgaaggtg
attgctggccggttcgagggcgacacaggcctcattgtgcgggtggaggagaacttcgtc
atcctcttctcggacctcaccatgcacgagctgaaggtgctcccccgggacctgcagctc
tgctcggagacggcatcaggtgtggatgtcgggggccagcatgaatggggggagctggtg
cagctggacccccagaccgtgggtgtcatcgtgcgactggagcgggagaccttccaggtg
ctgaacatgtatgggaaggtggtgactgtcaggcaccaggctgtgacccggaagaaggac
aaccgctttgccgtggccctggactcagaacagaacaacatccatgtgaaagacattgtc
aaggtcattgatggcccccactcaggccgggagggcgagattcgccatctcttccgcagc
ttcgccttcctgcattgcaagaaactggtagagaacgggggcatgtttgtctgcaagacc
cgccatctggtgctggcagggggctcgaagccgcgagatgtgaccaacttcacagtaggt
ggctttgcccctatgagcccccggatcagcagccccatgcaccccagtgctggaggtcag
cgtggtggctttggcagcccgggtggtggcagcggcggcatgagcaggggccgggggcgg
agagacaacgagctcatcggccagactgtgcgcatctcccaggggccttacaaaggctac
attggcgtggtaaaagatgccacggagtccacagcccgtgtggagctgcactccacctgc
cagaccatctcagtggaccgtcagcgcctcaccacagtgggctcacggcgcccgggcggc
atgacctcgacctatgggcggacacccatgtatggctcccagacgcccatgtacggctct
ggctcccgcacgcccatgtacggctctcagacgcctctccaggatggtagtcgcaccccg
cattatggctctcagacgcccctgcatgatggcagccgcactcctgcccagagtggggcc
tgggaccccaacaatcctaacacaccgtcacgggctgaggaagaatatgagtacgcgttc
gatgatgagcctacaccatccccacaggcctatgggggcacccccaatccccaaacacct
ggctacccagacccctcgtccccgcaggtcaacccacagtacaacccgcagacgccaggg
acgccagccatgtacaacacagaccagttctccccctatgcagccccctccccgcaaggc
tcctaccagcccagccccagcccccagagctaccaccaggtggcgccaagcccagcaggc
taccagaacacccactccccagccagctaccaccccaccccctcgcccatggcctatcag
gccagccccagcccaagccctgttggctatagtccgatgacacctggagctccctcccct
ggtggctacaacccacacacaccgggctcaggcattgagcagaactccagcgactgggtg
accactgacatccaggtgaaggtgcgggacacctacctggatacacaagtggtggggcag
acaggcgtcatccgcagtgtcacgggaggcatgtgctccgtatacctgaaggacagcgag
aaggttgtcagcatctccagtgagcacctggagcccatcaccccgaccaagaacaacaag
gtgaaggtgatcctgggtgaggatcgggaagccacaggtgtcctgctgagcattgatggc
gaggatggcatagtccgcatggaccttgatgaacagctcaagatcctcaacctccgcttc
ctggggaagctcctggaggcctga
DBGET
integrated database retrieval system
