Globicephala melas (long-finned pilot whale): 115862526
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Entry
115862526 CDS
T11080
Symbol
TDRD12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmf03036
]
115862526 (TDRD12)
Enzymes [BR:
gmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
115862526 (TDRD12)
Chromosome and associated proteins [BR:
gmf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115862526 (TDRD12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Helicase_C
TRAF_BTBD17
Motif
Other DBs
NCBI-GeneID:
115862526
NCBI-ProteinID:
XP_030730331
LinkDB
All DBs
Position
19:complement(17925210..18014333)
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AA seq
1309 aa
AA seq
DB search
MLHVLVLKIEDPGCFWVIIKGCSPFLDHEVDYQKLNSAMNDFYNSMCQDIEIKPLTLEEG
QVCVVYCQELKCWCRAVIKSIVSSADHYLTECFLVDFAKYVPVKSKNIRVAVETFMQLPY
RAKKFRLYCTKPVTLHIDFCEDSAEIVPAKKWDSAAIRYFQNILKAATQVEAKLCAVEED
TFEVYLYVTTKNEKVCVNDDLVAKNFAYYVSPTENKNLDSLEKPRLNIKSASFSSKLNPA
LTLWPMFLQGEDSQRMEKSSGLTFLAKSLQHPWPKGVGDLGPTSRILDTAIKYNTDSLRD
SPKKKSEKKQQCVSLKDVNKCVESSVYWPMKRGTTMYADPDTPAASALCRKSNEKPLRLA
EKKGYNEKNVCVKLLQFLNPDHLRADGISDLQQLQKLKSGSQLPLVVLRTRVEPCLSINT
APLSADLKKALQRNKFPGPSHTESYSWPPIARGCDMVVISHCGNDPLLYLPPLLTILQTG
GCYKSLPSRNGPLAVIVCPGWKKAQLVFELLGDYSVSSRPVVHPVVLTIGLHKDEAKNMK
LPSGCNVIVTTPHSLLRLLKYQSLLFLRLCHLILDEVEILFSEANEQMFPILDNFKKIIE
VEERESAPHQIVAVGVHWNRHIEQLIKEFMNDPYIVITAMEEAALYGSVQQVVRLCLECE
KTSTLLQTLDFIPSQAQKTLIFTGSVAETEIVCKVVESSSVFCLKMHKEMTFNLKSVSEQ
WKKKLSSGSHIVLALTDDCTPLLAITDATCVIHFSFPSSPKIFGGRLYCMSDHFQSVTEQ
GSPAEQREKKTKSVLLLTERNACHAVGVLRYLERADTKIPSELYEFTAGVLEAKEDKKAR
RPLCPYLKAFGFCKDKRICPDRHHVNPEVDMPRKLSNQTLPVFGYIKIIPFYVLNATNYF
GRIVDKHVDLYATLAADMKEYFEDSSNKTTVEKVEKFGLYGLAEKVAFHRVQVLEMSQKE
DTWALDNVLVKFIDEGRTKLITRDQLLHLPESFHTLPPQAVEFIVCRVKPADNEIEWNPK
VTRYIHHKINGKLHDAKVMLALGNTVWIDPMVHTTKLENLRTSVIDYNVRAEILSMGMGI
DNSEHVEQLKKLYKGAKMPTFEESVSQTLMPSSTEDDACLQSTQQEDKGSERGADSQTNS
ENPTHETLPENTGDASINKTTGPLKSFHPQIKWFQKEDVVILKIRIRNVKDYKCKYFRDR
VVFSAWAGERFYSADLELQANIIKDDCQCTVENGEPIITLSKEKKESWCGLLRQRNPNVA
FDFDHWEECDEDEDSHFSRLVNSKNPSCKVVELVETSDKASDENESESE
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgctccacgtcctggtgctgaagatcgaagatccaggttgcttctgggttattataaaa
ggatgtagtccctttttagatcatgaagttgactatcaaaaactaaatagtgccatgaat
gacttctataacagcatgtgtcaagatatagagataaaaccactaacgttggaagaaggg
caggtttgtgtggtttattgtcaggaactgaagtgctggtgcagggctgttattaagtca
atagtgtcttcagcagaccattacctcacagagtgtttccttgtggattttgccaagtac
gttccagtgaaatccaaaaacatccgagttgcagtagaaacttttatgcagcttccctac
agagcaaagaaattcagactgtactgcacaaaacctgtcacattgcacattgacttctgt
gaagacagcgctgagattgtacctgccaagaagtgggacagtgcagctattcggtacttt
cagaacatcctaaaagcagctacccaggtggaagccaaattgtgtgctgtggaagaagac
acttttgaggtttacctttatgtaactacaaaaaatgaaaaggtttgtgtgaacgatgat
ctggttgcaaagaacttcgcttattatgtatcacccacggagaataaaaaccttgattct
ttagagaagccaagattgaatataaagtcagcatccttttccagtaaactcaatccagca
cttactctttggccaatgtttttgcaaggagaagattctcaaaggatggaaaagtcaagt
ggtttaacttttctggcaaagtctctccagcatccgtggcccaagggtgtcggtgacctc
gggccaacctctaggatcctggatacagctataaagtataatacggattcattgcgagat
tcacccaaaaaaaaatcagaaaagaaacaacagtgcgtctccttaaaagatgtaaataag
tgtgttgagtcttcagtgtattggccaatgaaaagaggcacaaccatgtatgccgatcca
gatacaccagcagcaagtgctttatgtcggaagtcaaatgagaaaccacttagattggct
gagaagaaaggatacaatgagaagaacgtctgtgtgaaattattgcagtttctaaatcct
gatcatttgagagccgatggaatctctgatctgcagcagttgcagaagctgaagtcaggc
tcccagctgcccttggtcgttctgcgaaccagggtcgagccctgcttgtccatcaacacg
gcgccactctcggcagacctgaaaaaggctcttcaaagaaataagtttccgggccccagc
cacactgaatcttactcttggcctcccatagcacgtggctgtgacatggtggtcatttct
cattgtggaaatgaccctttgttgtaccttccaccactgcttacgattttgcaaacaggg
ggctgctacaagtcattaccaagtagaaatggacctctggcagtcatcgtgtgccccggg
tggaaaaaggcccaattagtttttgaattattgggagactatagcgtgtcctccaggcct
gttgttcatcctgtggtattaacaatcggactccacaaagatgaagccaaaaatatgaag
cttccaagtgggtgcaatgtaattgttacaacaccacatagcctcctgagacttctcaaa
tatcaaagcttgttatttcttagactctgtcatctgattttggatgaggtggagatacta
ttctctgaagctaatgagcaaatgtttcctatattagataactttaaaaaaattattgaa
gttgaagaaagggaatctgccccacatcagattgttgcagttggagttcattggaacaga
catatagagcagttaatcaaagagttcatgaacgacccctacattgtgatcacagccatg
gaggaggctgccctctatggcagtgtccaacaggtagtacgtctttgcctggaatgtgaa
aagacctccactttactccagactcttgatttcattccaagtcaggcacagaagaccttg
atcttcaccggttctgtagctgaaacagaaatagtgtgtaaggtagtagaaagcagttcc
gtgttttgtttgaaaatgcataaagaaatgacttttaatttaaaaagtgtttcagaacag
tggaagaagaagttaagttctggttctcacattgtattagccttaacagatgattgcaca
ccactcttggccatcaccgatgccacgtgtgtgattcacttcagctttccttcctcgccg
aaaatttttggtggacgcctgtattgcatgtctgatcattttcagagtgtaactgaacag
ggttctcctgcagaacagagagagaaaaaaaccaaatctgtgttgctgctgacggagaga
aatgcctgccatgcagttggcgtcctgcgctacttggagcgagcagataccaagattcct
tcagagctctatgagtttactgcaggggttctggaagccaaagaagataaaaaggccaga
aggcctctttgtccgtatcttaaggcttttggtttttgcaaagacaaaaggatctgtcct
gatcgacaccatgttaatccagaagtagacatgccaaggaaattatccaaccaaactcta
ccagtgtttggatacataaaaataatacccttttatgttttgaatgcaacaaattacttt
ggtcgtatagttgataaacatgtggatctttatgcaactcttgctgctgacatgaaagag
tattttgaagattccagtaataaaacaactgttgaaaaggtggagaaatttggattatat
ggattagcagaaaaagtagcttttcacagggttcaggtgttggagatgagccagaaggag
gacacgtgggccctggataatgtccttgtgaagttcatagatgaaggcaggaccaaactc
atcacaagagaccagctgcttcacctcccagaaagtttccacactctgccccctcaagcc
gtggagtttattgtttgtagagtgaaacccgcggacaatgagattgaatggaatccaaag
gttactaggtacattcatcataaaattaatgggaaactgcatgatgcaaaagtgatgttg
gctttaggaaatacggtttggatcgatccaatggtgcacactacaaaacttgaaaacttg
agaacttctgtcattgattataatgttcgagctgaaattttgtcaatgggaatgggcatt
gataactcagaacatgtagaacaactgaaaaaattatacaaaggagctaaaatgccaact
tttgaagaaagcgtaagccagaccctgatgccttcttcaacagaagacgatgcttgtctg
cagagcacacagcaagaggacaagggctcagagagaggtgccgactcccagacaaactca
gaaaacccaacacatgaaactttacctgaaaacactggagatgcttccattaacaaaact
acagggcctctgaaaagcttccacccacaaataaaatggttccaaaaagaggatgtggtc
atattgaagataagaataaggaatgtaaaagattacaaatgtaaatactttagagataga
gttgttttcagtgcctgggcgggagagagattttactcggctgatttggagctgcaggcc
aacataataaaagatgattgccaatgcacagtggaaaatggtgaaccaataatcactctc
tcgaaagagaaaaaggagtcttggtgtggcttactcagacagaggaatcctaacgtggct
tttgattttgatcactgggaagaatgtgacgaggatgaggatagccacttctccaggctg
gtaaattctaaaaatccgtcctgcaaagtggtagagttggttgagaccagtgacaaagct
tcagatgaaaacgaaagtgagagtgaatga
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