Globicephala melas (long-finned pilot whale): 115863852
Help
Entry
115863852 CDS
T11080
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03082
ATP-dependent chromatin remodeling
gmf04714
Thermogenesis
gmf05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115863852 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
115863852 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
115863852 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmf03021
]
115863852 (SMARCA2)
03036 Chromosome and associated proteins [BR:
gmf03036
]
115863852 (SMARCA2)
Transcription machinery [BR:
gmf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115863852 (SMARCA2)
Chromosome and associated proteins [BR:
gmf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
115863852 (SMARCA2)
Chromatin remodeling factors
BAF complex
115863852 (SMARCA2)
PBAF complex
115863852 (SMARCA2)
GBAF(ncBAF) complex
115863852 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
115863852
NCBI-ProteinID:
XP_030732933
LinkDB
All DBs
Position
6:52910902..53083585
Genome browser
AA seq
1557 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPSM
GSADFPQEGMHQMHKPIDGMHDKGVVEDIHCGSMKGTTMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPILGSGPTAPQMPPSQPGTLIPGDPQAMSQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQAAPQPQPPPQPQPPPPPQQQA
LVNYSRPSGPGPELSGPSPPQKLPVPAPSGRPSPAPPAAAPPPAAAVPGPSVPQPTPGQP
SPILQLQQKQSRISPVQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTK
ATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQ
QKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKET
ERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKE
KKKRRKKRKKAEENAEGEESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKAS
QLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAK
QIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWM
VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKW
APSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHR
MKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNA
PFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQK
ILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGY
SNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLR
LDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQ
AQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRA
FLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLM
EEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLE
EMEEEVRLKKRKRRRNVDKDPAKEDMEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVI
NYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVML
LCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEDEEEEDESESEAK
SVKVKIKLNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEPDGNEQSEASGTDDE
NT seq
4674 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcccacagaccctggtgcgatgccccacccagggccttcgccagggccggga
ccctctcctggaccaattcttgggcccagtccaggacctggaccatccccaggttccgtc
cacagtatgatggggccaagtcctgggcctccaagtgtctcacaccctatgccgtcgatg
gggtctgctgacttcccgcaggaaggcatgcatcaaatgcataagcccattgatggtatg
cacgacaagggggttgtggaagatatccactgtggatccatgaagggcaccactatgcga
cctcctcacccaggaatgggccctccccagagtccgatggaccaacacagccaaggctac
atgtcgccgcacccgtctccgctgggagcccccgagcacgtctccagccctatattggga
agtggcccaaccgcaccgcagatgccaccaagccagccagggaccctcatcccaggcgac
ccgcaggcgatgagccagcccaacagggggccctcgcctttcagtcccgtccagctgcat
cagctgcgagctcagattttagcttacaaaatgctggcccggggccagcccctcccggaa
acgctgcagctcgcggtccaggggaaaaggacgttgccgggcatgcagcagcagcaggcg
gcgcctcagccgcagccgccaccgcagccgcagccaccgccgccgccgcagcagcaggcc
cttgtcaactacagcaggccatctggcccggggccggagctgagcggcccgagcccccca
cagaagctgccggtgcccgcgcccagcggccggccctcgcctgcgccccctgcagcagcg
ccgccgcccgcggccgccgtgcccgggccctcggtgccacagccgaccccggggcagccc
tcgcccatcctgcagctgcagcagaagcagagccggatcagccccgtccagaaaccgcag
ggcctggaccccgtggagattctgcaggagcgggagtacagacttcaggctcgcatagcc
cataggatacaggaactggaaaatctccctggctctttgccaccagatttacgaaccaaa
gcaaccgtggaactgaaagcacttcggttactcaatttccagcgtcagttgagacaggag
gtagtggcctgcatgcgacgggacacgaccctggagacggccctcaactccaaagcatac
aaacggagcaagcgccagaccctgagggaagcccgcatgacggagaagctggagaagcag
cagaagatcgagcaggagaggaagcgtcggcagaagcaccaggaatacctgaacagtatt
ttgcagcatgcaaaagattttaaggagtaccatcggtctgtggctgggaagatccagaag
ctttccaaagcagtggccacttggcacgccaacactgaaagggagcagaagaaggagacc
gagcggatcgaaaaggagagaatgcggaggttgatggctgaagatgaagagggctataga
aaactgatcgatcaaaagaaagataggcgtttagcgtaccttttgcagcagacggatgag
tatgtggccaacctgactaatctggtttgggagcacaagcaagcccaggcggccaaagag
aagaagaagaggaggaagaagaggaagaaggctgaagagaatgcagagggggaggagtct
gccctgggaccagatggagagcccatagatgagagcagccagatgagtgacctccctgtc
aaagtgactcacacagaaaccggcaaggtcctgtttggcccagaagcacccaaagcaagt
cagctggatgcctggttggaaatgaatcctggttacgaagttgcccctagatcggacagc
gaagagagcgattctgattatgaggaggaggatgaagaggaagagtccagtaggcaggaa
actgaagagaaaatacttctggatccaaacagcgaagaggtttccgagaaggacgctaag
cagatcatcgagacagctaagcaagacgtggacgatgagtacagcatgcagtacagtgcc
aggggttcccagtcctactacacggtggcccacgccatctcggagagggtggagaagcag
tcggccctcctcatcaatgggaccctgaagcattatcagctccagggcctggaatggatg
gtttctctgtataataacaatttgaacggaatcttagctgatgaaatggggctgggaaag
accatacagaccattgcactcatcacttatctgatggagcacaaaagactcaatggcccc
tatctcatcattgttcccctttcgactctatctaactggacatatgaatttgacaaatgg
gctccttccgtggtgaaaatttcttacaagggcacccctgccatgcgtcgctccctcgtc
ccccagttacggagtggcaaattcaatgtcctcctgactacttatgagtacattataaaa
gacaagcacattcttgcaaagattcggtggaaatacatgatagtggacgaaggccaccga
atgaagaatcaccactgcaagctgactcaggttctgaacactcactacgtggcccccaga
aggatcctcttgaccgggacccccctgcagaataagctcccggagctctgggccctcctc
aacttcctccttcccacgatttttaagagctgcagcacatttgagcagtggtttaatgct
ccatttgccatgactggagaaagggtggacttaaatgaagaagaaactatattgatcatc
aggcgtctgcataaggtgttgagaccatttttactgaggagactgaagaaagaagttgaa
tcccagcttccagaaaaagttgaatatgtgatcaagtgtgacatgtcagctctgcagaag
attctgtatcgccatatgcaagccaaagggatcctcctcacagacggttcggagaaagat
aagaaggggaaaggaggcgctaagacacttatgaacactatcatgcagttgagaaaaatc
tgcaatcacccatatatgtttcagcacattgaggaatcctttgctgaacacctgggctat
tcaaatggggtcatcaatggggctgagctgtatcgggcctcaggaaagtttgagctactt
gatcgtattctgccaaaattgagagcgactaatcaccgcgtgctgcttttctgccagatg
acgtctctcatgaccatcatggaggattactttgcttttcggaacttcctttacctgcgc
cttgacggcaccaccaagtctgaagatcgtgctgctttgctgaagaaattcaatgaacct
gggtcccagtatttcattttcttgctgagcacgagagctggaggcctgggcttaaatctc
caggcagctgataccgtggtcatctttgacagcgactggaatcctcatcaggacctgcag
gcacaagaccgcgctcaccgcatcggccagcagaacgaggtccgcgtgctgagactctgc
accgtgaacagtgtggaggaaaagatcctcgcagctgccaagtacaagctgaacgtggat
cagaaagtgatccaggcaggcatgtttgatcagaagtcttcaagccacgagcggagggca
ttcctgcaagccatactggagcacgaagaggaaaatgaggaagaagatgaagtacccgac
gatgagactctgaaccaaatgatcgctcgacgagaggaggaatttgatctttttatgcgc
atggacatggaccggcggagggaggatgcccggaacccaaaacgcaagccccgcctgatg
gaggaagatgagctgccctcctggattattaaagatgacgccgaggtggaacggctgacg
tgtgaagaagaggaggagaagatcttcgggagggggtctcgccagcgccgggacgtggac
tacagcgacgccctcacagagaagcagtggctgagggccattgaagacggcaatttggaa
gaaatggaagaggaagtacggcttaagaagcgaaaaagacgaagaaatgtggataaagat
cctgcaaaagaagatatggaaaaggccaagaagaggagaggtcgccctccggctgagaaa
ctgtcaccaaatccccctaaactgacaaagcagatgaacgctatcatcgatactgtgata
aactacaaagacagttcagggcgacagctcagtgaagtcttcattcagttaccttcaaga
aaagaattaccagaatactatgaattaattaggaaaccggtggatttcaaaaaaataaag
gaaagaatccgtaatcataagtaccgaagcctgggtgacctggagaaagacgtcatgctg
ctctgtcacaatgctcagacgttcaacttggagggatcccagatctacgaagactccatc
gtcttacagtcggtgttcaagagtgctcggcagaaaattgccaaagaagaagagagtgag
gacgagagcaacgaagaggaggacgaggaagaggaagacgagtcagagtcagaggcaaaa
tctgttaaggtgaaaatcaagctcaataaaaaagatgacaaaggccgggacaaaggaaaa
ggcaagaaaaggccaaatcgaggaaaagccaaacctgtggtgagcgattttgacagcgat
gaagagccggatggaaatgaacagtcagaagctagtgggactgatgatgagtga
DBGET
integrated database retrieval system
