Globicephala melas (long-finned pilot whale): 115864345
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Entry
115864345 CDS
T11080
Symbol
NUP54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03013
Nucleocytoplasmic transport
gmf05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115864345 (NUP54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
115864345 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115864345 (NUP54)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115864345 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
DUF892
Motif
Other DBs
NCBI-GeneID:
115864345
NCBI-ProteinID:
XP_060155478
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All DBs
Position
5:complement(93539316..93579260)
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AA seq
563 aa
AA seq
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MAFNFGAPSGTSGTAAATAAPAGFGGLETANSTASGFNFGGFGLTANPAVNFNIGNFGVS
TTSATPFNFGNSLASAGGFSGFGTPSTTAGSAFSFSAPSNTGTTGLFGGAQNKGFGFGTG
FGTTAGTSTGLGTGLGTGLGFGGFHTQQQQQQQTTLGGLFSQPIQAPAQSNQLINTASAL
SAPTLLGDERDAILAKWNQLQAFWGTGKGYFNSNIPPVEFTQENPFCRFKAVGYSCMPNN
KDEDGLVVLVFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQTEVVIYV
VERSPNGTSRRVPATTLYAHFEQTNIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGV
DPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDIGELQKN
QTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQCELNAP
TQFKGRLNELMSQIRMQNHFGAVKSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDD
LEDIKLVEHGLNETIHIRGGVFS
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggccttcaactttggggctccctcgggcacctctggtacagctgcagccaccgcggcc
cccgcgggatttggtgggcttgagactgccaactccaccgccagtgggtttaattttggg
ggtttcggattaactgctaatcctgcagtgaactttaatattgggaatttcggtgtttct
actacctcggcgactccgttcaattttggtaacagtctggcaagtgcaggtgggtttagt
ggatttgggacaccgtctacaacagcaggttctgcattcagcttttctgctccatctaac
acgggcactactggactcttcggtggtgctcagaacaaaggttttggatttggcactggc
tttggcacaacagctggaactagtactggtttaggtactggtttgggaactggacttgga
tttggaggatttcatacacagcagcagcagcagcaacaaactacattaggtggtctcttc
agccagcctatacaagctcctgcccagtccaaccaactgataaatactgcaagtgctctt
tctgctccaacactactgggagatgagagagatgctattttggcaaaatggaatcaacta
caggccttttggggaacaggaaaaggatatttcaacagtaacattccaccagtggaattc
acacaggaaaacccattttgccgttttaaggcagtaggttatagttgtatgcccaataat
aaagatgaagatgggctagtggttttagttttcaacaaaaaagaaacagatattcgaagc
cagcaacagcaattggtagaatcattgcataaagttttgggaggaaaccagacccttact
gtaaatgtagagggcattaaaacattgccagatgatcagacagaagttgtcatttatgtt
gttgagcgttctccaaatggtacttcaagaagagttccagctacaacactatatgcccat
tttgaacaaaccaatataaaaacacagttgcagcaacttggtgtaaccctttctatgact
agaacagaactttctcctgcacagatcaaacagcttttacagaatcctcctgctggtgtt
gatccaattatctgggaacaagccaaggtggataaccctgattctgaaaagttaattcct
gtaccaatggtgggtttcaaagaacttcttcgaagactgaaggttcaagatcagatgact
aagcagcatcagaccagattagatatcatatctgaagatattggtgaattacagaagaat
caaactacaactatggccaaaattgcacaatacaagaggaaactcatggacctttcccat
agaaccttacaggtcctcatcaaacaggaaattcagaggaagagtgggtatgccatccaa
gctgatgaagagcagttgcgagttcagctagatacaattcagtgtgaactaaatgcccct
actcagtttaagggccgactgaatgaactgatgtcccagatcaggatgcagaatcatttt
ggagcagtcaaatctgaagaaagatattacatagatgcagatctgttacgagaaatcaag
cagcatttgaaacaacaacaggaaggccttagccacttgattagcatcataaaagatgac
ttagaagatatcaagttggtagaacatggattgaatgaaaccatccacatcagaggtggt
gtcttcagttga
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