Globicephala melas (long-finned pilot whale): 115864813
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Entry
115864813 CDS
T11080
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha
KO
K08532
RAR-related orphan receptor alpha
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf04659
Th17 cell differentiation
gmf04710
Circadian rhythm
gmf05017
Spinocerebellar ataxia
gmf05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
115864813 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
115864813 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
115864813 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
115864813 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmf03000
]
115864813 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
gmf03310
]
115864813 (RORA)
Transcription factors [BR:
gmf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
115864813 (RORA)
Nuclear receptors [BR:
gmf03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
115864813 (RORA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
115864813
NCBI-ProteinID:
XP_030734745
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Position
2:73046797..73147858
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AA seq
468 aa
AA seq
DB search
MMYFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNC
LIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQ
PGEAEPLTPTYSISANGLTELHDDLSSYIDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD
INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL
QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL
LKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHL
TEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVS
TLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattttgtgatcgcagcgatgaaagctcaaattgaaattattccatgcaagatc
tgtggagacaaatcatcaggaatccattatggtgtcattacatgtgaaggctgcaagggc
tttttcaggagaagtcagcaaagcaatgccacctactcgtgtcctcgtcagaagaactgt
ctgattgatcgaaccagtagaaaccgctgccaacactgtcgattacagaaatgccttgcc
gtggggatgtctcgagatgctgtaaaatttggccgcatgtcgaaaaagcaacgagacagc
ttgtacgcagaagtacagaaacaccggatgcagcagcagcagcgagaccaccaacagcag
cctggagaggccgagccgctgactcccacctacagcatctcggccaacgggcttacggag
cttcacgacgacctcagcagctacattgacgggcacacccccgagggcagcaaggcagac
tctgccgtcagcagcttctacctggacatacagccttccccggaccagtcaggtcttgat
atcaacggaatcaaaccagaaccaatatgtgactacacaccagcatcaggcttctttccc
tactgctctttcaccaatggagagacgtccccaactgtgtccatggcagaactagaacac
cttgcacagaatatatctaaatcacatctggaaacttgccaatacttgagagaagagctc
cagcagataacgtggcagacctttctgcaggaggagattgagaattaccaaaacaagcag
cgggaggtaatgtggcagttgtgtgccatcaaaattacagaagctatacagtatgtggtg
gagtttgccaaacgcattgatggatttatggaactgtgtcaaaacgatcaaattgtgctt
ctcaaagcaggttctctggaggtggtatttatcagaatgtgccgtgcctttgactctcag
aacaataccgtgtactttgatgggaaatatgctagccccgacgtcttcaaatccttaggt
tgtgaagactttattagctttgtatttgaatttggaaagagtttatgttctatgcacctg
actgaagatgaaattgcattgttttctgcatttgtcctgatgtcagcagatcgctcatgg
ctgcaggaaaaggtcaaaattgaaaagctgcaacagaaaattcagctagctcttcaacac
gtcctacagaagaatcaccgagaagatggaatactaacaaagttaatatgcaaggtgtct
acattaagagccttatgtggacgacatacagaaaagctaatggcgtttaaagcaatatac
ccagacattgtgcgacttcattttcctccattatacaaggaattgttcacttcagaattt
gagccagcaatgcagattgatgggtaa
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