Globicephala melas (long-finned pilot whale): 115865125
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Entry
115865125 CDS
T11080
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115865125 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115865125 (XAB2)
03041 Spliceosome [BR:
gmf03041
]
115865125 (XAB2)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115865125 (XAB2)
Spliceosome [BR:
gmf03041
]
Complex B
Other components
Prp19-related factors
115865125 (XAB2)
Complex C
115865125 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_NPHP3
TPR_1
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
115865125
NCBI-ProteinID:
XP_030735375
LinkDB
All DBs
Position
3:165581657..165591939
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AA seq
853 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLSV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHEGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGQKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVTGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAEQDQPSRAQSKILFVRSDASREELAQLAQQANPEEIELGEDEDEMDLEPNEVRLEQQ
SVPAAVFGSLKED
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcctctcgaggcccgagcggccggaccttgtcttcgaggaggag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaaatgttggctccgc
tacattgagtttaagcagggtgccccgaagcccagactcaatcagctctatgagcgggcg
ctgaagctgctgccctgcagctacaaactctggtaccgctatttgaaggcgcgccgggca
caggtgaagcatcgctgtgtgaccgaccctgcctacgaagatgtcaacaactgccacgag
agggcttttgtgttcatgcacaagatgccccggctgtggctagattactgccagttcctg
atggaccagggacgcgtcacacacacgcgccgcactttcgaccgtgccctccgagcgttg
cccatcacacagcactctcgtatttggcccttgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgctgtgcggggctaccggcgcttcctcaagctgagccccgagagtgcc
gaggagtacatcgagtacctcaagtcgagcgaccggctggacgaggccgcacagcgcctg
gccaccgtggtgaacgacgagcgcttcgtgtccaaggctggcaagtccaactaccagctg
tggcacgagctctgcgacctcatctcccagaacccagacaaggtgcagtctctcagtgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccaactgggcaagctctggtgc
tcgctggccgactactacatccgcagcggtcacttcgagaaggctcgggacgtgtatgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagttcgaggagagcatgatcgcggcgaagatggagacggcctcggagctggggcgggag
gaggaggacgacgtggacctggagctgcgcctggctcgctttgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcacgagggccgcccgagggagatcattaacacgtacacggag
gccgtgcagactgtggaccccttcaaggcgaccggcaagccccacaccctgtgggttgcg
ttcgccaagttttacgaggacaacgggcagctggatgacgcccgcatcatcctggagaaa
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgcgagtgtggc
gagctggagctccggcacgagaactacgaccaggccttgcggctgctgcgaaaggcgacg
gcgctgcccgcccgccgcgccgagtacttcgacggctcggagcccgtgcagaaccgcgta
tacaagtctctgaaggtgtggtcaatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaagccgtctatgaccgcatcctggacctgcgcatcgccacgccccaaatc
gtcatcaactacgccatgttcctggaggagcacaagtactttgaagagagcttcaaggca
tacgagcgtggcatctcgctgttcaagtggcccaacgtgtccgacatctggagtacctac
ctgaccaagttcatcgcccgctacgggggccagaagctggagcgggcacgggacctgttt
gagcaggcgctggatggctgccctcccaaatacgcaaagaccctgtacctgctgtacgcg
cagctggaggaggagtggggcttggcccggcacgccatggccgtgtatgagcgcgccacc
agggccgtggagcccgcccagcaatacgacatgttcaacatctacatcaagcgggcggcc
gagatctacggggtcacccacacgcgcagcatctatcagaaggccatcgaggtgctgtca
gacgagcacgcccgggagatgtgcctgcggttcgcggacatggagtgcaagctcggggag
atcgaccgcgcccgggccatctacagcttctgctcgcagatctgtgacccccggacgacc
ggggccttctggcagacgtggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacgtacaacactcaggtcaacttc
atggcctcccagatgctcaaggtgacgggcagcgccacgggcactgtgtccgacctggcc
cccgggcagagcggcatggacgacatgaagctgctggaacagcgggccgagcagctggcg
gctgaggccgagcaggaccagccctcgcgggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaggagctggcccagctggcccagcaggccaacccagaggagatcgag
ctgggcgaggatgaggacgagatggacctggagcccaatgaggtgcgcctggagcagcag
agcgtgccggccgccgtgttcgggagcctgaaggaagactga
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