Globicephala melas (long-finned pilot whale): 115865205
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Entry
115865205 CDS
T11080
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X4
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03082
ATP-dependent chromatin remodeling
gmf04714
Thermogenesis
gmf05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115865205 (SMARCA4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
115865205 (SMARCA4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
115865205 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmf03021
]
115865205 (SMARCA4)
03036 Chromosome and associated proteins [BR:
gmf03036
]
115865205 (SMARCA4)
Transcription machinery [BR:
gmf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115865205 (SMARCA4)
Chromosome and associated proteins [BR:
gmf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
115865205 (SMARCA4)
Chromatin remodeling factors
BAF complex
115865205 (SMARCA4)
PBAF complex
115865205 (SMARCA4)
GBAF(ncBAF) complex
115865205 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
115865205
NCBI-ProteinID:
XP_030735579
LinkDB
All DBs
Position
3:complement(163696923..163784194)
Genome browser
AA seq
1645 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPASGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKL
IPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLD
PVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVV
CMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQH
AKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLI
DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD
GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS
EEEEEEEEEEQPQPAQPPALPVEDKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQ
ALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMG
LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARR
AFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYV
APRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI
LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS
EKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKF
ELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTF
NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL
RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHC
STGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLD
RRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDS
LTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKK
RGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIR
KPVDFKKIKERIRSHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQ
KIEKEEDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRA
KPVVSDDDSEEEQDEDRSGSGSEED
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccagacccacccctgggcggaactcctcggccaggcccttccccgggcccg
ggcccctcccctggagccatgttgggccctagcccaggtccctcacccggctccgcccac
agcatgatggggcccagcccagggcctccctcagcaggacaccccatcccgacccagggg
cctggagggtaccctcaggacaacatgcaccagatgcacaagccaatggagtccatgcac
gagaagggcatgtcggacgacccccgctacaaccagatgaaggggatggggatgcggtcg
gggggccacgccgggatggggcccccgccaagtcccatggaccagcactcccaaggttac
ccctcgcccctgggtggctccgagcacgcctccagtccggttccagccagcggcccggcc
tcaggcccgcagatgtcgtccgggcctggaggcgccccgctggatggtgctgacccccag
gctttggggcagcagaaccggggcccgaccccctttaaccagaaccagctgcaccagctc
agagctcagatcatggcctacaagatgctggcccgggggcagcccctccctgaccacctg
cagatggcggtgcaggggaagcggccgatgcccgggatgcagcagcagatgccaacacta
cctccaccctctgtgtccgcaacaggacctggtcccgggcccgggcccggccccggtcct
ggaccagcacctccaaattacagcaggcctcacggtatgggagggcccaacatgccccct
ccaggaccctcaggtgtgccccccgggatgcccggccagccccctggagggcctcccaag
ccctggcctgaaggacccatggcgaatgctgctgcccccacaagcacacctcagaagctc
atccccccgcagccaacgggtcgcccctcgcctgcgccccccgccgtccctcctgctgcc
tcccccgtgatgccgccccagacacagtcgccagggcagccggcccagcccgcccccatg
gtgccgctgcaccagaagcagagccgcatcacccccatccagaagccgcggggcctggac
cccgtagagatcctgcaggagcgggagtacaggctgcaggctcgcatcgcacaccgaatt
caggaacttgaaaaccttcccgggtccctggccggggatttgcgaaccaaagcaaccatc
gagctcaaggccctgaggctgctgaacttccagaggcagctgcggcaggaggtggtggtg
tgcatgaggagggacacggccctcgagacggccctcaacgccaaggcctacaagcgcagt
aagcggcagtccctgcgcgaggcccgcatcactgagaagctggagaagcaacagaagata
gagcaggagcgcaagcgccggcagaagcaccaggaatacctcaacagcattcttcagcac
gccaaggatttcaaagaatatcacaggtcggtcacaggcaaaatccagaaactcacgaag
gcggtggccacataccacgccaacactgagcgggaacagaagaaggagaatgaaagaatc
gagaaggagagaatgcggaggctcatggccgaggacgaggaagggtaccgcaagctcatc
gaccagaagaaggacaagcgcctggcctacctcctgcagcagacagacgagtacgtggct
aacctcacggagctggtgcggcagcacaaggccgcccaggtcgccaaggagaagaagaag
aagaagaaaaagaagaaggcagaaaacgctgaaggacagacacctgcaatcggacctgat
ggcgagcctctggatgagaccagccaaatgagcgaccttccggtgaaagtgatccacgtg
gagagtgggaagatcctcacgggcacagacgcacccaaagcagggcagctggaggcctgg
ctggaaatgaacccggggtatgaagtagctccgagatctgatagtgaagagagtggctca
gaagaagaggaggaggaggaggaggaggagcagccacagccagcacagcctcccgccctg
cccgtggaggacaagaagaagattccagatccagacagcgacgacgtctccgaggtggac
gcccggcacatcattgagaacgccaagcaagatgttgatgacgagtatggcgtgtcgcag
gccctcgctcgtggcctgcagtcctattatgccgtggcccacgccgtcaccgagagggtg
gataagcagtcggcgctcatggtcaacggcgtcctcaagcagtaccagatcaaaggcttg
gagtggctggtgtccctgtacaacaacaacctgaatggcatcctggctgatgagatgggc
ctggggaagaccatccagaccatcgctctcatcacgtacctcatggagcacaagcggatc
aacgggcccttcctcatcatagtacctctctcaacgctgtccaactgggcatacgaattt
gacaagtgggccccctcggtggtgaaggtgtcctacaagggctctccagcagccagacgt
gctttcgttccccagctccggagcggcaagttcaacgtcttgctgacgacctacgagtac
atcattaaagacaagcacatccttgcaaagatccgttggaagtacatgatcgtggacgaa
ggccaccgcatgaagaaccaccactgcaagctgacgcaggtcctcaacacgcactacgtg
gccccccgccgcctgctgctgacgggcacgccgctgcagaacaagctccctgagctctgg
gcgctcctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgagcagtgg
ttcaacgcgccctttgccatgaccggggaaaaggtggacctgaacgaggaggaaaccatt
ctcatcatccgtcgtctccacaaagtgctgcggcccttcctgctccggcggctcaagaag
gaagtcgaggctcagttacctgaaaaggtggagtacgtcatcaagtgcgacatgtccgcg
ctgcagcgcgtgctttaccggcacatgcaggccaagggggtgctgctcaccgatggctct
gaaaaggataagaagggcaaaggtggcaccaagaccctgatgaacaccatcatgcagctg
aggaagatctgcaaccacccgtacatgttccagcacatcgaggagtccttttccgagcac
ttgggatttaccggtggcatcgtccaagggctggacctgtaccgagcctcggggaaattt
gagctgctcgatagaattcttcccaaactccgggccaccaaccataaagtgctgctgttc
tgtcagatgacctccctcatgacgatcatggaagactattttgcgtatcgcggctttaaa
tacctcaggctcgatggaaccactaaagcggaggaccggggcatgctgctgaagaccttc
aacgagcccggctccgagtacttcatcttcctgctcagcacccgggctggggggctgggt
ctgaaccttcagtcagccgacactgttatcatattcgacagtgactggaacccccaccag
gacctgcaagcgcaggaccgtgcccaccgcatcgggcagcagaacgaggtgcgtgtgctc
cgcctctgcacggtcaacagcgtggaagagaagatcctggctgcggccaagtacaagctc
aacgtcgaccagaaggtgatccaggccggcatgttcgaccagaagtcctccagccacgag
aggcgcgctttcctccaggccatcctcgagcacgaggagcaggacgagagcagacactgc
agcacgggcagcggcagtgccagcttcgcccacactgcccctccgccagcgggcgtcaac
cccgacttggaggagccacctctaaaggaagaagacgaggtgcctgacgacgagacggtg
aaccagatgattgcccggcacgaggaagagttcgacctgttcatgcgcatggacctggac
cgcaggcgtgaggaggcccgcaaccccaagcggaagccacgcctgatggaggaggatgag
ctcccctcgtggatcatcaaggacgacgcagaggtggagcggctgacatgcgaggaggag
gaggagaagatgttcggccgcggctcccgccatcgcaaggaggtggactacagcgactcg
ctgaccgagaagcagtggctcaaggccatcgaggagggcacgctggaggagatcgaagag
gaggtccggcagaagaaatcatcgcggaagcggaagagggacagcgatgccggcccctcc
accccgaccaccagcacccgcagccgcgacaaggacgacgagagcaagaagcagaagaag
cgtggccggccgcctgccgagaagctctcccccaacccgcccaacctcaccaagaagatg
aagaagatcgtggacgctgtgatcaagtacaaggacagtagtagtggacgtcagctcagc
gaggtgttcatccagctgccgtcccgcaaggagctgcctgagtactacgagctcatccgc
aagcctgtggacttcaagaagataaaggagcgcatccgcagccacaagtaccgcagcctc
aacgacctagagaaggacgtgatgctgctgtgccagaacgcgcagaccttcaacctggag
ggctccctgatctacgaagactccatcgtcctccagtcggtcttcaccagcgtgcggcag
aaaatcgagaaggaggaagacagtgaaggggaggagagtgaggaggaagaggagggcgag
gaggaaggctcggagtcggagtctcgctcagtcaaagtgaagatcaagctgggccggaag
gagaaggcccaggaccggctcaagggcggccggcggcggccgagccgtggctccagggcc
aagccggtggtgagcgacgacgacagtgaggaggagcaggacgaggaccgctcaggaagt
ggcagcgaggaagactga
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integrated database retrieval system
