Globicephala melas (long-finned pilot whale): 115865950
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Entry
115865950 CDS
T11080
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03030
DNA replication
gmf03410
Base excision repair
gmf03420
Nucleotide excision repair
gmf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115865950 (RFC1)
03410 Base excision repair
115865950 (RFC1)
03420 Nucleotide excision repair
115865950 (RFC1)
03430 Mismatch repair
115865950 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gmf03032
]
115865950 (RFC1)
03400 DNA repair and recombination proteins [BR:
gmf03400
]
115865950 (RFC1)
DNA replication proteins [BR:
gmf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
115865950 (RFC1)
DNA repair and recombination proteins [BR:
gmf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
115865950 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
BRCT_2
AAA_14
AAA_5
RuvB_N
AAA_30
AAA_33
AAA_7
AAA_16
nSTAND3
Zeta_toxin
AAA_18
AAA_17
RNA_helicase
AAA_19
NTPase_1
AAA_28
Motif
Other DBs
NCBI-GeneID:
115865950
NCBI-ProteinID:
XP_030736921
LinkDB
All DBs
Position
5:complement(63591265..63671691)
Genome browser
AA seq
1146 aa
AA seq
DB search
MDIRKFFGVIPSGKKVVSETAKKNEKTKSAEETRKAKKGIKEIKVNRSCKEDDFKQKQPN
KKKRIIYDSDSESEETVQVKNSKKRPEKLPLSSKPAKIRHQDPVTYISETDEEDDFVCKK
AASKSKENGGSPNSYLGASNMKKNEENTKTLNTKNKPLSPMKLTPTSVLDYFGTASVQRS
AKKMVASKRKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLALLDEEPK
TKKAQKDPGERETFSSVQASLCKAEKPKYPHKEQFSDDRKNCSPKKQTKCESSKESQQHS
RSSTHKIGETSSPKTSSKLAPLKKKEESSNKETQPMASKRKENAIELKETRTPKKIKSSP
AKKESISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESI
ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT
MPGKKSKYEIAAEAEMKKEKSKLERTPQKNDQGKRKISPTKKESESKKCRLTPKKQSSIK
SIKKETSMFQRGLDFKEQVAEETNGDSWARNLADDSSENKVENLLWVDKYKPSSLKTIIG
QQGDQSCANKLLRWLQNWHKSPSEDKKHAGKFGKFAGKDDGSSFKAALLSGPPGVGKTTT
ASLVCQELGYSYVELNASDTRSKNSLKEIVAESLNNTSIKGFYSSGAAHSVGTKHALIMD
EVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQI
KGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSLRA
KKDIKLGPFDVARKVFVTGEETAHMSLVDKLDLFFHDYSIAPLFVQENYIHVKPVAAGGD
MKKHLMLLSRAADSISDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGYMTQFPTFP
SWLGKHSSMGKHDRIVQDLALHMSLRTYSSKRTVNVDYLSHIRDALVQPLTSQGIEGVQD
VVALMDAYYLMKEDFENIMEISSWGDRPSPFSKLDPKVKAAFTRAYNKEVHLIPYSLQAV
KTHRHSTGPALDAEYNEELNEDDSQSDEKDQDTLETDAMIKKKTKSSKTSKSEKESRKGK
GKSSKK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgaaaattctttggggttataccaagtggaaagaaagttgtaagtgaaaca
gcaaagaagaatgagaaaacgaagtctgctgaagaaaccagaaaagcgaagaaaggaata
aaggaaatcaaggtaaatcgttcttgtaaagaagatgacttcaaacagaagcaaccaaac
aagaaaaagaggatcatctatgattcagattcagaatcagaggagacagtgcaggtaaaa
aactccaaaaagcgaccagaaaaattgccactgtcttctaaacctgctaaaattcgacac
caggatcctgttacatacatttcagaaacagatgaagaagatgactttgtgtgtaagaag
gcagcctctaaatcaaaagagaatggaggatctccaaatagttatcttggagcatcaaac
atgaaaaagaatgaagaaaacactaagacactaaacactaagaataagcctttgtcacca
atgaagcttacccccacatcagtgcttgattattttggaactgcaagtgtccaaagatcg
gctaagaagatggtggcaagcaaaagaaaagagccttcacaaaatgcagatgattccaga
ttaaatgatgaagccatcgccaagcaattgcaacttgatgaagatgcagagctagagaga
caactgcatgaagatgaagagtttgccagaacattagccttgttggatgaagaacccaag
accaaaaaggctcaaaaggacccaggagagagagagacgttttcatctgtgcaagccagt
ttatgtaaagcagaaaaacctaaatatcctcataaagaacaattttcagatgacagaaag
aactgcagtcctaagaagcaaactaaatgtgaaagttcaaaagaatctcagcaacattcc
aggtcatccactcataaaataggagaaacttcttctccaaaaaccagttccaagctggca
ccactgaaaaaaaaagaagaaagttctaataaagaaacacagcctatggcctcaaaaaga
aaagaaaatgccattgagttgaaagagacaagaactcctaagaaaatcaaaagttctcca
gctaaaaaagagtctataagtcctgaagattctgaaaagagacgaactaattatcaagct
tatcgaagctacttaaatcgagaaggtcccaaagctctgggctccaaagagataccaaag
ggagctgaaaattgcttggaaggccttacgtttgtaatcacaggagtgctggagtccatt
gaacgagatgaggccaagtctctaattgagcgttatgggggaaaagtaacaggaaatgtc
agcaagaaaacaaactaccttgtcatgggtcgtgatagtggtcagtccaagagtgataag
gcagcagccttgggaacaaaaattattgatgaagatggcctattgaatctgattcgaact
atgccaggcaagaagtccaagtatgaaatagcagctgaagctgagatgaagaaagaaaaa
tccaaattggaaagaacaccccaaaaaaatgaccaaggaaaaagaaaaattagtccaact
aagaaggaatcagaatctaaaaagtgcagactgactcccaaaaagcaaagctctataaag
tcaataaaaaaggaaacaagtatgtttcagagaggcctggacttcaaggagcaggtggct
gaggaaacaaatggtgacagctgggctaggaatttggctgacgacagcagtgaaaacaaa
gtggagaatttgctctgggtggataaatataagccatcctcgctcaagaccataattgga
cagcaaggtgaccagagctgtgccaacaaactcctacgctggctccaaaactggcacaag
agtccatccgaagataagaaacacgcaggaaagtttggtaaatttgctggcaaagatgat
ggctccagttttaaagctgcattgctctcaggccctcccggtgttggcaaaacaaccaca
gcttctctggtttgtcaggaattgggatatagctacgtggaactgaatgcaagtgacact
cggagtaagaacagtttgaaggagattgttgctgaatcgctgaataataccagcatcaaa
ggcttttattcaagtggagcagcccattcagtaggcacaaaacatgctctcatcatggat
gaagtagatggcatggccggcaatgaggacaggggaggaattcaggaattaattggcctg
ataaaacatacaaaaattcccattatttgtatgtgcaatgatagaaatcatcccaagatt
cgatctttggttcattactgttttgatcttcgttttcaaagacctcgggttgaacaaatt
aagggtgctatgatgtctattgcatttaaagagggtttaaagatcccccctccagctatg
aatgaaataattttgggagccaatcaagatatcagacaggttttacacaatctgagtatg
tggtgtgcacgaagtaaagcactaacctatgaccaggctaaggctgattctcttagagcc
aaaaaggatatcaaattgggcccatttgacgttgcccggaaagtgtttgtaactggagag
gagactgctcatatgtcacttgtggacaaattagatctcttttttcatgattattcaata
gcacccctctttgtccaggagaactacatacatgtgaagcctgtagccgcagggggtgac
atgaaaaagcacttgatgcttttaagcagagcagcagacagcatatctgatggtgaccta
gtggaccgtcagatccggaataagcaaaactggagtcttctgcccacacaggccatttat
gccagtgttcttcctggagagttaatgagggggtacatgacccagtttcctaccttccca
agttggttggggaagcactcatctatgggcaaacacgatcgtattgttcaggacctagca
ttgcatatgagtctcagaacttactccagcaaaaggactgtaaacgtggattatctgtcc
catataagggatgcacttgtacagcccttgacctcacaagggatagaaggagtacaggat
gttgttgctcttatggacgcgtattatttgatgaaagaagactttgagaatatcatggaa
attagcagctggggagacagacctagtcccttctccaagctggatcccaaggtgaaagca
gccttcacaagagcttacaataaggaagtccaccttattccgtattcactccaggcagta
aagacacacagacacagcacaggcccagcgctggatgctgaatacaatgaagagttaaat
gaagatgactctcaatctgatgagaaagaccaggacactttggaaactgatgctatgatc
aagaaaaagacaaaatcttcaaagacttcaaaatcagaaaaagagtccagaaaaggaaaa
ggaaaaagttcaaagaaataa
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integrated database retrieval system
