Globicephala melas (long-finned pilot whale): 115866094
Help
Entry
115866094 CDS
T11080
Symbol
CDKAL1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gmf03016
]
115866094 (CDKAL1)
Enzymes [BR:
gmf01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
115866094 (CDKAL1)
Transfer RNA biogenesis [BR:
gmf03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
115866094 (CDKAL1)
Prokaryotic type
Methylthiotransferases
115866094 (CDKAL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Bcl-2
Motif
Other DBs
NCBI-GeneID:
115866094
NCBI-ProteinID:
XP_030737151
LinkDB
All DBs
Position
11:complement(86052937..86704277)
Genome browser
AA seq
612 aa
AA seq
DB search
MCHGELHLKSLQFPESGVLIFQEDLRLIANNQEKMPSASCDTFLDDIEDIVSQDDSKPQD
RHFARKHVVPKVRRRNTQKYLQDENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQL
AAYGYKITENASEADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQD
YLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPLIEI
ISINTGCLNACTYCKTKHARGNLASYPVDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDI
GTSLPALLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASD
TVLMEMKREYCVADFKRVVDFLKDKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFP
SLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSQVFHSYNPYDHKIGERQKVLVTEESF
DSKFYVAHNRFYEQVLVPKNPTFMGKMVEVNVYESGKHFMKGQPVSDAKVYAPSISKPLA
KGEVSGLTEEFRNRLGNHLNSVSHTLDATQQDSASSRMALQLQRLHQDCTLRMSVVLALF
AFLFAFLIKVCN
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcatggcgagctccatctaaagtcgctgcagtttccggagagtggcgtactcatc
tttcaagaagatttgagactaattgcgaataatcaagagaagatgccttctgcatcctgt
gatacattcctggatgacatagaagatattgtgtcacaagacgattcaaagccccaagat
aggcattttgcgagaaagcacgttgttccaaaggtgcgaaggcgaaatacccaaaaatat
ttgcaagatgaaaacagtccaccaagtgatagcactattccaggcatacagaaaatttgg
atacggacttggggttgttctcataataattcagatggagaatatatggctggacaacta
gctgcttatggatataaaattacagaaaatgcatcagaggcagacttatggctcctgaat
agttgtactgtaaaaaatccggctgaagaccactttagaaactcaattaaaaaagctcaa
gaggagaacaagaaaatagtgcttgctggatgtgttcctcaagcccagcctcgccaggac
taccttaaagggctgagcatcataggggttcaacagatagatcgtgtggtagaagttgtg
gaggaaacaattaaaggtcactctgtgagactgctgggtcagaaaaaggataatggaaaa
cggttggggggagcacgactggatttgccaaagattaggaagaatccactgatagaaatc
atttccatcaacactgggtgtctcaatgcttgtacctactgcaaaactaaacacgccaga
ggaaatttggccagttatccagttgatgagttagtagatagagccaaacagtcttttcaa
gagggtgtttgtgaaatatggttgaccagtgaagacacaggggcttatggcagagatatt
ggcaccagtctgcccgcactgctgtggaagctggttgaagtgattccggagggagcaatg
ctgaggcttggcatgacaaatccgccctatattttagagcatctggaggaaatggcaaaa
atccttaatcacccccgagtctatgcctttctgcacataccagtccagtctgcctctgac
actgtgctcatggaaatgaaaagagaatactgcgtggctgacttcaaaagagtagtggat
tttctgaaagacaaagttcctggaataactattgctacagacattatctgtggttttcct
ggagaaacagaccaagattttcaagaaacagtgaaacttgttgaagagtacaaatttcca
agtctctttattaaccaattttacccaagaccaggaactcctgctgcaaaaatggagcaa
gttccagcgcaagtgaaaaagcaaagaacaaaagatctctctcaagtatttcattcttac
aatccatatgatcacaagattggtgagagacaaaaagtgttagtcacagaagaatctttt
gattccaagttttatgttgcacacaatcgattctatgagcaggttttagtgccaaagaac
cccacattcatggggaaaatggtcgaagtgaacgtttatgaatcaggaaaacattttatg
aaagggcagccagtttcagatgccaaagtatacgcgccatccatcagcaaaccattagca
aaaggagaagtctcaggtttaacagaggaattcagaaataggcttgggaaccacctgaat
tcagtatcccacaccttggatgcaactcagcaagactcggcgagttccagaatggcgcta
caattgcaaaggctacaccaggactgtacactgaggatgtctgtggtcctggctctgttt
gcttttctttttgcttttttgatcaaggtctgtaattaa
DBGET
integrated database retrieval system
