Globicephala melas (long-finned pilot whale): 115866363
Help
Entry
115866363 CDS
T11080
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
gmf Globicephala melas (long-finned pilot whale)
Pathway
gmf03440
Homologous recombination
gmf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115866363 (BRIP1)
03460 Fanconi anemia pathway
115866363 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmf03400
]
115866363 (BRIP1)
Enzymes [BR:
gmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115866363 (BRIP1)
DNA repair and recombination proteins [BR:
gmf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
115866363 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
115866363 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
ARCH_RTEL1
DUF6399
Motif
Other DBs
NCBI-GeneID:
115866363
NCBI-ProteinID:
XP_030737673
LinkDB
All DBs
Position
20:complement(49216716..49415510)
Genome browser
AA seq
1182 aa
AA seq
DB search
MMSSVCSEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCS
ALAWQQSLSGKPVNEGLSKKAEVPLSCCCTCHSKNFTNNDVNQGTSYHFNSPSIPTSERN
GTLSTCQDSPEKTTLAAKLSAKKQASMYRDENDDFQVEKKRIRPLETTQQIRKRHCFEKE
VHHLDAKVVSGKTTKLNSPLGKINSFSPQNPPGNCSRCCCSTKQGDSQDSSNTTKKDHGG
KSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCM
ELLDGKNGKFCYFYHGVHKISDQHILQTLQGMCKAWDIEEFVSLGKKLKACPYYTARELM
QDADIIFCPYNYLLDAQIRESMDINLKEQVVILDEAHNIEDCARESASYSITEVQLRFAR
DELDSMVNNNIRKKDHEPLRAVCYSLINWLEANSEHLVERGYESSCKVWSGSDMLLNLHK
MGITTATFPILQGHFSAILQKEEKVSSVHGKEEAREVPIISASTQIMLKGLFMVLDYLFR
QNSRFADDYKVAIQQTYSWINQTDTSDKNGFLVLPKNKKRLRQKAAVHVLNFWCLNPAVA
FSDINGKVWTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRS
LCATFQHTETFEFQDEVGALVLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGVWHNLEL
VKTVIVEPQRGEKTDFDELLQMYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAV
ITIGIPFPNVKDLQVELKRQYNDQHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDW
GALILVDDRFRSNPSRYISGLSKWVRQLIQHHSTFESALESLAEFSKRHRKVIDVYKEDR
KSVQDNESPLAVACLKDNTSTYLLEAASHLSPEYPREDDPLLLEESAQAVGAEKIVISRS
TSPTFNKQTNRVSWSGSNFLEQYLTGKILTGTPKFRSSEDCASNSSTFKTEKGREAVLPL
TDKCKSSSLTVNTSLGPCPQSETIVPSIKINATLLNPEDPDILLSLVSEEAELSTSNTEA
EDESIYFTPELYDPIDTNEEKNELVGTDRDNRLANNSNCILAEDLFEIKTMKGMDSVREM
KAEDCTGTKLNRLTHIKESKVDDIGSNVKMTHINELELGKNS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttcagtatgttctgagtatacaattggtggggtgaagattaactttccttgt
aaagcttatccatcacagcttgctatgatgaattctattgtcagaggattaaatagtaag
cagcattgtttgttggagagccccacagggagtgggaaaagcttagccttactttgctct
gctttagcatggcagcaatctcttagtgggaagccagtgaacgaaggcttaagtaaaaaa
gctgaagtaccattgtcgtgttgttgtacatgccattcaaagaattttacaaacaatgac
gtgaaccagggaacttcatatcatttcaacagtccaagtataccaacttctgaaagaaat
ggcactttgtcaacttgtcaagactctcctgaaaaaactacactggctgcaaagctatct
gctaagaaacaggcatccatgtacagagatgaaaatgatgattttcaagtagagaagaaa
agaattcgacccttagaaactacacagcagattagaaaacgtcattgttttgaaaaggag
gtgcaccatttggatgcaaaagttgtttcaggaaagaccacaaaactcaactccccatta
ggaaagataaactccttttctccacaaaatccccctggtaactgttctaggtgctgttgt
tctactaaacaaggagacagtcaagattcttcaaataccactaagaaggatcatgggggg
aagtccaagatacccaaaatatattttgggacacgcacacacaagcagattgctcagatt
actagagagctccggaggacagcatactcaggggtcccaatgactattctttccagcagg
gatcacacttgtgtccatcctgaagtagtaggtaacttcaacagaaatgaaaagtgcatg
gaattgctagatggaaaaaatggaaaattctgctatttttatcatggtgttcataaaatt
agtgatcaacacatattacagactctccaagggatgtgcaaggcctgggatatagaagaa
ttcgtcagcttggggaaaaaactaaaggcatgtccatattacacagcacgagaactaatg
caggatgctgacataatattttgtccctacaactatcttctagatgcacaaataagggaa
agtatggatatcaatctgaaagaacaggttgtcattttagatgaagctcataacattgag
gactgtgctcgggaatcagcaagttacagtataacggaagttcagcttcggtttgctcgg
gatgaactagatagtatggttaacaataatataaggaagaaagaccatgaacccctacga
gctgtgtgctatagcctcattaattggttagaagcaaactctgaacatcttgtggaaagg
ggttatgaatcatcctgtaaagtatggagtggaagtgacatgctcttaaatttacacaaa
atgggcataaccactgctacttttcctattttgcagggccatttttctgctatccttcaa
aaagaagaaaaagtctcatcagttcatggtaaagaggaggcaagagaagtacctattatt
agtgcttcaactcaaataatgctcaaaggactttttatggtgcttgactatctttttagg
caaaatagcagatttgcagatgattataaagtcgctattcaacagacttactcttggata
aatcagactgatacttcagataaaaatgggttcttggttctaccaaaaaataagaaacgt
ttacgacagaaagcagcagttcatgtgctgaatttttggtgcttaaatccagctgtggcc
ttttcagatattaatggcaaggtttggacgattgttttgacatctgggacattatcacca
atgaaatccttttcatcagaacttggtgttacatttactatccaactggaggctaatcat
gtcattaataactcacaggtttgggttggcaccattgggtcaggccccaagggtcgcagt
ctctgtgctaccttccagcacacggaaacatttgagttccaggatgaagtgggagcactt
gtgttatctgtgtgccagactgtgagccaaggaattttgtgtttcctgccatcttacaag
ttactagaaaagttaaaagaacgttggctctccactggtgtatggcataatctggagttg
gtgaagacagtcattgtagaaccacagagaggagaaaaaactgattttgatgaattactg
cagatgtactatgatgcgatcaagtacaaaggagaaaaagatggcgccctcctggtggca
gtttgtcgtggtaaagtgagtgagggtctggatttctcagatgacaacgcccgtgctgtc
ataacaataggaattccttttccaaatgtgaaagatctacaggttgaactaaagcgacaa
tataatgaccagcattcaaaattaagaggtcttttaccaggtcgtcagtggtatgaaatt
caagcatacagggccttaaaccaggccctaggtaggtgtattcgacacaaaaatgattgg
ggagctcttattctagtggatgatcgcttcaggagtaacccaagtcgatacatatctgga
ctttctaagtgggttcggcagctgattcagcaccattcaacctttgagagtgctctggag
tccttggctgaattttccaaaaggcaccgaaaggtcattgatgtatacaaagaagacaga
aaatctgtacaggacaatgagtctccgcttgcagtggcttgtttgaaggataatacctca
acttatttattagaagcagcaagccatctatcaccagaatatcctagggaagatgatcca
ttattattggaagagtctgcccaggcagtaggagcagaaaaaattgtgatttccagatcc
acaagcccaaccttcaacaaacaaacaaacagagttagctggtctggcagtaattttctg
gaacagtatcttactggtaaaattctgactggaacacctaagtttaggtcatcagaggac
tgtgcctctaattcttccactttcaaaacagaaaagggacgtgaagcagttttgccactc
actgataaatgtaagtcctcctctctgacagtaaacacatcacttggaccatgccctcaa
tcggaaaccattgttccatcaataaagattaatgctactctcctgaatccagaagatcca
gacattctgttatctctagtaagtgaagaagctgaactttctacttcaaatacagaagca
gaggatgaatctatctattttacacccgaactttatgatcccatagatacaaatgaagaa
aagaatgaactagttggaactgatagagacaacagattggctaataattcaaattgcatt
ttagctgaagatctttttgaaattaaaactatgaaaggaatggattcagtcagagaaatg
aaagctgaggattgcacaggcacaaagttgaatagactcacgcatattaaagaaagtaaa
gttgatgatattggtagtaatgtaaaaatgactcatataaatgaattggaactgggaaaa
aactcatga
DBGET
integrated database retrieval system
