Globicephala melas (long-finned pilot whale): 115867337
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Entry
115867337 CDS
T11080
Symbol
NRDE2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
gmf Globicephala melas (long-finned pilot whale)
Brite
KEGG Orthology (KO) [BR:
gmf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmf03019
]
115867337 (NRDE2)
Messenger RNA biogenesis [BR:
gmf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115867337 (NRDE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
TPR_14
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
115867337
NCBI-ProteinID:
XP_030739456
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All DBs
Position
2:complement(163940225..163986025)
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AA seq
1165 aa
AA seq
DB search
MALFPAFAGVSEEPESGSPRKELDWLSNPSFCVGTITSLSQQTEEVTTFVSEESLLTRSP
LNSEPSGESDTNKKPKQTSRKKKKEKKKKRKHQHHKKTKRKRGQSSSSGSESYTDSEKDI
SSRSIRSSKKESEKPNQENNATADIGRHFVWLEDIQALTGETFRTDKKPDPANWEYKSLY
RGDVARYKRKGDSCLGINPRKQCISWEGTSTEKKRSHKHVERYFTKKSVGLMNIDGVAIS
SKTEPPSSESISFIPVKGAEDVVSPVTTWLNPLGIYDEATTQWLQGRGPSEQESKQPDSQ
PNRENVLLKAKVEEFNRRLWENPRDIQLWMAFVAFQDEVMRSPGLYAIEEGQQEKRKRSL
KLVLEKKLAILERAVESNPSSVDLKLAKLQLCTEFWEPSTLVKEWQKLIFLHPNNTALWQ
KYLLFCQSQFSTFSISKIQSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFALFLQQCHF
LRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWR
AWMQQQERGGWVVVSPDDDDDEPEDDDQEIKDKTLPRWQIWLAAERSRDHRHWRPWRPEK
TKKQAEEDCEDPERQVLFDDIGQSLIQLSSPDLQFRLIAAFLQFLGVPSGFSPPASCLYL
AMDENSIFDNGLYDEKPLTFLNLSFSGVSCIGRTDQLGCRHWTRGHSREGEEFIRNIFHL
VMPLFSGKERSQLCFSWLQYEIAKVVWCLRTKNKKRLKSQGKNCKKLAKNLLKEPDNRNN
FCLWKQYAHLEWLLGNTEDARRVFDTALGMAGSRELKDHELCELGLLYAELEVELLPDVR
GAAPARAIHVLTRLTENGAYGPYTGQVLAVHILKARKAYEHALQDCLGESCVSDPAPADS
FSRLISLVKCFMLFQYLTIGIDAAVRIYEQVFAKHKVSVSAEGPGLEGSASPPSLSSVLE
AVTLMHTSLLRFHMKVAVYPLAPLREALSEALKLYPDNQVLWRSYVQIQNKSHSASKTRR
FFDAITRSAKPLEPWLFAIEAEKMRKRLVETVQRVDGREVYATIPETGLTHRIRALFENA
MRSDYGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQE
ILDLMTEKELRVRLPLEELELLLED
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgttccccgcctttgcgggtgttagtgaggagcccgagagcgggagccccagg
aaagaattagactggctgagcaacccaagcttttgtgttggaaccataacatctctgagc
caacaaactgaagaggtcacaacctttgtttctgaagagtcgctactgaccaggagtcct
ctgaattcagagccttcaggtgaaagtgacactaacaaaaagcccaaacaaacaagcaga
aaaaagaagaaagagaaaaagaagaaaaggaagcatcagcaccacaagaaaaccaagaga
aaacgtggacagtcaagtagcagtggatctgagtcatatactgattctgaaaaagacata
tcgtccagaagcatcagaagcagtaaaaaggaatcagagaaaccgaatcaagaaaataat
gccactgctgatattggacgtcactttgtttggcttgaggacattcaggctctgacggga
gaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctttac
cgaggagatgtagcaagatacaagaggaaaggagactcctgccttggcattaaccctagg
aagcagtgtatatcttgggaggggacttccacagaaaagaagcggtcacacaagcatgtc
gagcgctactttacaaagaagagtgtgggattaatgaacattgacggagttgccattagc
agtaaaactgaacctccctcatcagagtcgatctcatttatcccagtgaagggtgcagag
gatgtggtttcccctgttacaacctggttgaaccctctggggatttatgatgaagccacc
acgcagtggttgcaaggccggggtccttcagagcaagaatccaagcagccagattcacag
cccaacagagagaacgtgcttctcaaggccaaggtggaggagtttaacaggaggctttgg
gagaatcctcgggacattcagctgtggatggcatttgttgcttttcaggacgaggtcatg
aggagtccgggcctgtatgccatcgaggaaggacagcaggaaaagcggaagcggtccctg
aagctggttctggagaagaagctggccattctggaacgggccgtggaaagcaacccgagc
agcgtggatctgaaacttgccaagctgcagctctgcaccgagttctgggagccctccact
ctggtcaaagagtggcagaaactgatatttttacatcccaacaatacagccctttggcag
aaataccttttattttgccagagccagtttagcaccttttccatatcaaaaattcagagt
ctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttgtctcac
cctgagctgcctggcactgaggaggccatgtttgccctctttcttcagcagtgccacttt
ctgcggcaggctggtcactccgagaaggccgtctctctgttccaggccatggttgacttc
accttcttcaaacccgacagtgtgaaagacctgcctaccaaaggacaggtagaattcttt
gagcccttttgggacagtggagagcccagggccggggagaagggcgcccgaggctggaga
gcgtggatgcagcagcaggagcggggcggctgggtggtcgtcagcccagatgatgacgat
gatgaaccagaagacgacgaccaggaaattaaagataagactctgcccaggtggcagatc
tggcttgctgctgagcggtcccgagaccacagacactggcggccgtggcgccctgagaag
accaagaagcaggcggaggaagactgtgaggacccggagaggcaggtgttgtttgatgat
attggacagtctctgatccagctttccagcccggatcttcagtttcggctgattgcagcc
tttctgcagttcttgggtgtgccttccggcttcagccctccggcctcctgcctctatctg
gccatggatgagaacagcatctttgacaatggactttatgatgaaaagcccttgactttt
ctcaacctttcattttctggcgtcagctgtatcggacgcacagaccagctgggttgccgg
cactggaccaggggtcacagtcgagagggcgaggagttcatccgcaacatcttccacctc
gtgatgcctttgttttcaggcaaggagaggtctcagctctgcttctcctggttacagtac
gagattgcaaaggtcgtttggtgtctgcgcactaaaaacaagaagagattaaaatcacaa
ggaaagaactgcaaaaaactagccaagaatctcctcaaggagccagacaaccgcaacaat
ttttgcctctggaagcagtatgcgcatctggagtggttgctcggcaacacagaggatgcc
agaagagttttcgatacagcgctcggcatggcagggagcagagaactgaaggaccatgag
ctgtgtgagctcggtctcctctacgccgagctggaggtggagctgttgccggacgtgaga
ggggctgccccagcccgagccattcacgtattgaccagactgaccgagaatggggcctac
gggccctacaccgggcaagtcttggccgttcacattttgaaagctcggaaggcttatgaa
cacgcgctgcaggactgtttgggggagagctgtgtctctgatccagctcccgccgattcc
tttagccgcctgattagcctggttaaatgctttatgctcttccagtatttgaccataggg
atcgacgctgctgtgcggatatatgagcaggtatttgcgaaacacaaggtctctgtttcc
gcagagggccctggtctggagggcagtgccagccccccgagcctgagcagtgtccttgag
gccgtcaccctgatgcacacgagcctgcttagattccacatgaaagtcgccgtctaccct
ctggctcctctgcgagaggctctctcggaggctttaaagttgtatccggacaaccaggtt
ctttggaggtcgtatgtacagattcagaataagtcccacagtgccagtaagaccagaaga
ttcttcgatgcgatcaccaggtctgccaaacccttggagccgtggttgttcgcaattgaa
gctgagaaaatgaggaaaagactagtggaaactgtgcagagggtagatggtagagaggtc
tacgccaccattcccgagaccggcctgacacatcggatcagagccctgtttgaaaatgcg
atgcggagtgactacggcagccagtgccccttactgtggaggatgtatttgaattttttg
gtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcacttcagaattgt
ccttgggcaaaggtgctgtacctggatgccgtggagtacttccccgatgagatgcaggag
atcctggacctgatgacggagaaggagctccgggtgcgcctgccgctggaggagctggag
cttctgcttgaggactag
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