Gordonia mangrovi: NWF22_02320
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Entry
NWF22_02320 CDS
T08472
Name
(GenBank) DEAD/DEAH box helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gmg
Gordonia mangrovi
Pathway
gmg03420
Nucleotide excision repair
gmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NWF22_02320
03430 Mismatch repair
NWF22_02320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmg03400
]
NWF22_02320
Enzymes [BR:
gmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NWF22_02320
DNA repair and recombination proteins [BR:
gmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NWF22_02320
MMR (mismatch excision repair)
Other MMR factors
NWF22_02320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
UVF78726
LinkDB
All DBs
Position
complement(475355..478753)
Genome browser
AA seq
1132 aa
AA seq
DB search
MTERPTISAVAIAAALGLPTPTPEQVAVIEAPMEPVLVVAGAGAGKTETMAARVVWLVAN
GLVAPDEVLGLTFTRKAASELGARIRRRLSMLAGSPALRGWDVDGAIAARLSGGDPEVST
YHAYAGRLIADYGLLLPVEPNSTLLSETELWQMAFSVVSNWTGELHTTKVPASVTEAVLK
LYGDMSEHLVDMDDLRRAGDDLYQLIDTLPKGPRQRDTPTQALLKVKDVIDERRELIPMV
IALGETMRAATALDFGSQMSLAARLVMRNPEVVAAERSSFKAVLLDEYQDTGHSQRILLA
TLFGVAPGAPKRSARGSVAVTAVGDPIQSIYGWRGASAANLPRFTDDFRQSDGSPAVRLE
LLTSWRNSAHALRLANETSEELRRRGIPVSVLRPRPDAPTGNVSLALTETVVDERRWVGE
HVERLYRGAEAAGEPPPTTAILVRRNDDSAPLAAELESRGIPAEVVGIGGLLHVPEIEDV
VAMLRLIADPMAGTAAMRLLTGARWQLGAGDLAALWKRATELAAVEFNAAKGIVASREAL
DEALDAVLPTEIVDRAGIADALVDPGEPHRYSEEGFRRVRAFGAQLESLRRRIGQPLPEL
VADVENTIGVAVEAQIRARRMRGAITGREHLDAFAEYVTTYAERPGANLPGLLAFLDTAE
TIEKGLEPGRIEVAEQRVQILTVHAAKGLEWDVVVLPHLCHNIFPGGRADTTWLGSAKEL
PAQLRGDLADGANAEGFPPLDLHAVGDRKELELALTEHKEAVAQRRLEEDRRLLYVALTR
AKETLLISAHHWSESGDRPRGGSEFFAEIRSIVTAAIDDPTVDSIGMAIDVDADEPAQDA
TNPLADEIVSAPWPRDVLGERRDAVDAAARLVEDAIAARGTPTLFEASATDTTLGSGAAV
ASEADLTASAREIAAWRAEVDALLAENHRINTAEVDVALPTHLSVSQLVELDADEAAFAR
RLRRPTPFAPNPTARRGTAFHAWVEGWFGATRLLDIDELPGAADATAAPDTDLEELRASF
LASRWAQRSPTEVEVPFETVIGPTVIRGRIDAVFAEPDDGWLVVDWKTGAVPEPARRESL
FVQLAAYRIAWAQLAGVPLAKVRAAFHYVRSGYTLEPDDLPDRPALAALLAK
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcggcccacgatctcggccgtcgcgatcgccgccgccctgggtttaccgacc
ccgacgcccgaacaggtcgcggtgatcgaggcgccgatggagccggtgctggtggtggcg
ggcgccggtgcgggcaagaccgagaccatggccgcccgggtggtgtggctggtcgccaac
gggctcgtcgctcccgacgaggtgctcggcctgacgttcacccggaaggcggccagtgag
ctcggcgcgcgcatccggcggagactgtcgatgctggccgggtcaccggcgttgcgtggc
tgggatgtcgacggtgccatcgcagcccggctgagcggcggcgatcccgaggtcagtacc
taccacgcctacgccgggcggctcatcgccgactacgggttgctgctgccggtggaaccc
aactccacgctgctgtcggagacggagttgtggcagatggcgttctcggtggtgtccaac
tggaccggcgaactgcacaccaccaaggtgccggccagcgtcaccgaagcggtcctgaaa
ctctacggcgacatgtccgagcacctggtcgacatggacgacctgcgtcgggccggcgac
gacctgtatcagctgatcgacacactgccgaagggaccgcgtcagcgggacaccccgacc
caggcactgctcaaggtcaaggacgtcatcgacgaacggcgcgaactcatcccgatggtc
atcgcgctgggggagacgatgcgcgcggcgaccgcactcgatttcggcagtcagatgtcc
ctggccgcgaggttggtcatgcgcaatccggaagtggttgccgccgagcgcagctcgttc
aaggcggtgttactcgacgaataccaggacactggccactcgcagcgaatactgctcgcc
acactcttcggggtggcgccgggagcgccgaaacggtcggcgcgcggatcggtcgcggtg
accgcggtcggcgatcccatccagtcgatctacggatggcgcggcgcgtcggcggccaac
ctcccgaggttcaccgacgacttccgtcaatccgacggttcgcccgcggtgcgcctggaa
ttgttgacgagctggcgcaattcggcgcacgctctgcgactggccaacgagacctccgag
gagttgcggcgccgcggcatcccggtcagtgtgttgcgtcctcgccccgacgcgccgacc
ggaaacgtctccctggccctcaccgagaccgtcgtcgacgagcggcgctgggtcggcgaa
cacgtcgaacggctctaccggggcgccgaggcggccggcgagccgccacccactactgcc
atcctggtgcgccgcaacgacgattccgcaccgctggcggccgaactggaaagccgcggc
atccccgccgaggtcgtcggcatcggcgggctgctgcacgtaccggagatcgaggacgtc
gtggcgatgctgcgactgatcgccgacccgatggccggtaccgcggcgatgcgcctgctc
accggggcacgctggcaactcggtgcgggcgatctcgcggccctgtggaagcgcgccacc
gaactcgccgcggtcgagttcaacgctgcgaaggggatcgttgcctcccgtgaggccctc
gacgaggcgttggacgcggtgctgcccaccgagatcgtcgaccgggccggcatcgccgac
gccctggtcgacccgggtgagccacaccgatacagcgaggagggatttcggcgcgtccgt
gcgttcggggcgcagctggagtcgctgcggcgccggatcggccaaccgctgcccgaactc
gtcgccgacgtggagaacaccatcggtgtcgccgtggaggcgcagatccgcgcgcgccgg
atgcgcggtgccatcacgggccgtgaacacctcgatgcgttcgccgaatacgtgaccacc
tatgccgaacggccgggcgcgaacctgcccggcctgctcgcattcctcgataccgcggag
accatcgagaagggcctggagccggggcggatcgaggtcgccgaacagcgggtgcagatc
ctcaccgtgcatgccgcaaaaggcctggagtgggatgtcgtggtgttgccccatctgtgc
cacaacatctttccgggcgggcgggccgacaccacctggttgggcagtgcgaaggagttg
cctgcgcagttgcgcggtgacctggccgatggagcgaatgcggagggattcccgccgctc
gatctgcacgcggtgggcgatcgcaaggaactcgaactcgcactgaccgagcacaaggag
gccgttgcgcagcgtcgtctcgaagaggatcgccggctgctctatgtcgcgctcacccga
gccaaggagacgttgctgatctccgcccatcactggtcggagagcggcgaccgaccgcgc
ggcgggtcggagttcttcgcggagatccgctcgatcgtgaccgcggcgatcgacgatccg
accgtcgactcgatcggcatggcgatcgatgtcgacgccgacgagccggcgcaggacgcg
accaatccgttggccgacgagatcgtgagcgcaccgtggccccgggatgtcctgggggag
cggcgagacgcggtcgacgcggcggcccgactggtggaggacgcgatcgccgcgcgcggc
acaccgacgctcttcgaggcgtcggccaccgacaccacacttggttccggagcggcggtg
gcctcggaggcggacctgaccgcgtcggctcgggagatcgccgcgtggcgcgccgaggtg
gacgccttgttggccgagaaccatcgcatcaacaccgcggaggtcgacgtggcgttgccg
acgcatctgtcggtcagccagctcgtcgaactcgacgccgacgaggcggccttcgcgcgg
cggctgcgtcgacccacgccattcgcacccaacccgaccgcacgccgcggcacggccttc
cacgcctgggtggagggttggttcggcgccacccggctcctcgacatcgacgaactgccc
ggtgcggccgacgccaccgcggcccccgacaccgacctcgaggagttgcgcgcgtcattc
ctcgcctcgcgctgggctcagcgcagccccaccgaggtggaggtgccgttcgagacggtg
atcggtcccacggtgatccgcggccggatcgatgcggtgttcgccgagccggacgacggc
tggctggtggtggactggaagaccggagcggtacccgagccggcccgccgcgagtcgttg
ttcgtgcaactcgccgcctaccggatcgcctgggcgcagttggccggcgtgccgctggcg
aaggtgcgcgcggctttccactacgtccgttccggctacaccctggagcccgacgacctg
cccgatcgacctgcactcgctgcattgctggcgaaatga
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