Gordonia mangrovi: NWF22_20020
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Entry
NWF22_20020 CDS
T08472
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gmg
Gordonia mangrovi
Pathway
gmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NWF22_20020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmg03019
]
NWF22_20020
03009 Ribosome biogenesis [BR:
gmg03009
]
NWF22_20020
Enzymes [BR:
gmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NWF22_20020
Messenger RNA biogenesis [BR:
gmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NWF22_20020
Ribosome biogenesis [BR:
gmg03009
]
Prokaryotic type
rRNA helicases
NWF22_20020
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrA_inter
HEM4
P-loop_SecA
Cas3-like_C_2
CMS1
LuxC
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UVF77539
LinkDB
All DBs
Position
4402779..4404557
Genome browser
AA seq
592 aa
AA seq
DB search
MSGNEDAASADAVGGGVSFDDLDIAPKVRQAIVDVGYETPSPIQAATIPPLMSGRDVVGL
AQTGTGKTAAFAIPILSRLDTSARRPQALVLAPTRELALQVAEAFGRYSAHLPEVRVLPI
YGGQSYGVQLSGLRRGAQVIVGTPGRVIDHLDKGTLDISELDFLVLDEADEMLTMGFAED
VERILSETPDDKQVALFSATMPSAIRRLAQRYLNDPQEITVKARTATAQNITQRYLQVSH
QRKLDALTRFLEVETFDAMIVFVRTKSATEELAEKLRARGFSAVAINGDMVQAQRERTIN
QLKGGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFV
SPRERHLLRAIERATRSTLTEIGLPSVEDVNAQRVAKFADSITENLSSDHLDLFRKLVED
YAGEHDVALADVAAALALETRDGGFLMAPDPPEGQRPERRERGPRRSDGQFATYRIAVGR
RHKVSPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPENLDNETLASLRHTRIGKNPI
DIRRDFGPPRTRGGAKRAQGGQRGGQGRDGYGKRSESWGKRGPRHVAGRGRN
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcaacgaggacgcggcgagcgccgatgcagtgggcggcggcgtctccttcgac
gacctcgacatcgcgccgaaggtccgccaggcgatcgtcgacgtcggctatgagacgccg
tcaccgatccaggcggccacgatcccgcccctgatgagtggccgcgacgtggtgggcctc
gcccagacgggtaccggtaagaccgccgccttcgccatcccgatcctgtcgcggttggac
acctccgcacgccggccgcaggcgctggttctcgcgcccacccgtgagctggcactacag
gtcgccgaggcgttcggccgctactccgcgcatctgcccgaggtgcgggttctgccgatc
tacggcgggcagagctacggcgtccagttgtccggtttgcggcgcggggcgcaggtcatc
gtgggtacacccggccgcgtgatcgaccatctcgacaagggcaccctcgacatctctgaa
ctcgacttcctcgtgctcgacgaggccgatgagatgctgaccatgggtttcgccgaggat
gtggaacgcatcctgtcggagacgcccgacgacaagcaggtggcgctgttctcggccacc
atgcccagcgccatccgtcgtctggcgcagcgctacctgaacgacccgcaggagatcacg
gtcaaggcgcggaccgcgacggcgcagaacatcacccagcggtatctgcaggtctcccac
cagcgcaagctggatgccctgacccgatttctcgaggtcgagaccttcgacgcgatgatc
gtcttcgtccgcacgaagtcggccacggaggaactcgcggagaagctgcgggcgcgtggg
ttctcggcggtcgccatcaacggcgatatggtgcaggcgcagcgtgaacgcaccatcaat
cagctcaagggcggcagcatcgacatcctggtggcgaccgatgtggccgctcgtggactc
gatgtcgaccggatctcgcacgtcgtcaactacgacatcccgcacgacaccgagtcctac
gtgcaccggatcggccgcaccggtcgcgccggccgctccggtaacgcgctgctgttcgtc
tctccgcgtgagcggcacctcctgcgcgccatcgaacgcgcgacccgctcgacgctgacg
gagatcgggctgccgagcgtcgaggacgtgaacgcacagcgggtggcgaagttcgccgac
tcgatcaccgagaatctgtcgtcggaccatctcgatctgttccgcaagttggtggaggac
tacgccggcgagcacgatgtcgcgctggcggacgtggccgccgcgctggcactcgagacg
cgcgatggggggttcctgatggctccggacccacccgaggggcagcgtccggagcgccgc
gagcgcggcccgcgccgatccgacgggcaattcgccacgtaccgcatcgcggtgggacgc
cggcacaaggtctcgccgggcgcgatcgtcggcgcgatcgccaatgagggaggcctcacg
cgcggcgacttcgggaacatcagcatccgggacgacttctcgctggtggagctgccggag
aacctcgacaacgagaccctggcctccctgcggcacaccaggatcggcaagaaccccatc
gacatccgtcgtgacttcgggccgccccgcacgcgcggcggtgccaaacgcgcccagggc
ggccagcgtggtggccaaggccgcgacggatacggcaagcggtccgagagctggggcaaa
cgcggaccccgccacgtcgcaggtcgagggcgaaactga
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