Gordonia mangrovi: NWF22_20380
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Entry
NWF22_20380 CDS
T08472
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gmg
Gordonia mangrovi
Pathway
gmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NWF22_20380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmg03019
]
NWF22_20380
03009 Ribosome biogenesis [BR:
gmg03009
]
NWF22_20380
Enzymes [BR:
gmg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NWF22_20380
Messenger RNA biogenesis [BR:
gmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NWF22_20380
Ribosome biogenesis [BR:
gmg03009
]
Prokaryotic type
rRNA processing factors
NWF22_20380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Motif
Other DBs
NCBI-ProteinID:
UVF77602
LinkDB
All DBs
Position
4495515..4498862
Genome browser
AA seq
1115 aa
AA seq
DB search
MTDNGSPADANAASAPAEEFPSRLRVHALARALGLTSREVLAHLAELGIETRSPQSSIDR
ETAEAVAAKVRGDAAGDQSADTPAEAAPGVVEAAPPTEPAAEQPAGTTDDQATTQSTSEP
EPEPAEPAQDESAPPSESVTAESEESPTLFSAVEQTQHQPVRPTTEDVMAQPLFLSPQAA
EPTRRPGRAADDDRTRSDDSESADDSSDDGDSSGDGERGSRRRRRGRRGRGRGRGDQSDN
GGDESQSGTENSSVATDGADEDKDSGRPSGKKGKKGKNKGDRAEGGKADKSGTQGKNGDA
ASAGMTERADEDGGTDRPDKDRPDKDRPDKDRSDKDRSDKAKQSESDEGAASDADSSDSD
SSRGEDGEQGSSKRRRRRRRRKGGADAEDSSPDDPPNTVVHEREPRSKKARDEVQGISGS
TRLEAKRQRRRDGRDAGRRRPPILSESEFLARREAVDRVMVVRERSANSAINGNGSGGND
QLVPIEDYTQVAVLEDGVLVEHFVTTETSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRN
GVLYAGEVNWDAAGLDGGSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRFLV
YVPGGSSTGISRKLPDVERKRLKSILGKLVPDDAGVIIRTASEGVSADELAADIARLETQ
WKDIDAAVGKAKKGSGASAPQALYEEPDLLVRVVRDLFNEDFKKLVIEGGKAWNLVERYI
NAVAPDLMERVERFEKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTV
VDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVL
RRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTPCSHCGGRGIVVHANPVE
ARPDESSGNDGGGSKRSRRNRRKSEPAPEQQKPAHNPAEHPMFRAMAAHAHDHDHDAEGA
DGAKDAGEGAERTQATGGARSGTDDTQPDTSAADQPVTGGDGDRAARSDADEAQPARSTP
AETPAPEAGGIEAPETSGPTSEPRARRRRRVVRQAAAPAASEPIVISADENVDSTPVTTF
GPAGSSATAETAVAVRRRPRRRTAGRPAGPPPTEQ
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaacgggtcgccggctgacgcgaacgcagcgtcagcaccggcggaggagttc
cccagcaggcttcgtgtgcatgccctcgccagggcgttgggcctgaccagccgcgaggtg
ttggcgcacctcgccgagctgggcatcgagacacgcagcccccaatccagcatcgaccgc
gagaccgccgaggcggtcgccgcgaaggtgcgcggcgacgcggcgggcgaccaatcggcc
gacacgcccgccgaggcagcgcccggagtggttgaggcggcgccgccgaccgaaccggcc
gctgagcaaccggccggcacaaccgacgatcaggcgaccacgcagtcgacgtccgaaccg
gagccggaaccggcagagcccgctcaggatgagtccgctccgccgagcgagtcggtgacc
gcggagagcgaggaatcgccgacgctgttctcggcagtcgagcagacccagcaccagccc
gtgcggccgacgaccgaggacgtcatggcacagccgctgttcctgtcgccgcaggcggcc
gagccgacccgtcgtccgggccgtgcggccgacgacgacaggactcggtccgacgactcc
gagtccgccgatgactcgtccgatgatggcgattcctcgggagacggtgagcgcggctca
cgtcgccgtcgccggggccgccgcggccgcggtcgtggtcgcggcgaccagtccgacaac
ggcggcgacgagtcgcagtcggggaccgagaattcgtctgtcgcgaccgacggggccgat
gaggacaaggactccggacgcccttcgggcaaaaagggcaagaagggcaagaacaagggc
gaccgggccgagggcggcaaggccgacaagtcgggcacgcagggcaagaacggcgatgcc
gccagcgccggcatgacggagcgggccgacgaggacggcggcacggaccgcccggacaag
gaccgccccgacaaggatcgcccggacaaggaccgctcggacaaggaccgctcggacaag
gccaagcagtccgagtccgacgagggcgctgcatccgatgccgactcctcggactccgat
tcatcgcgcggcgaggacggcgagcaggggtcgtcgaagcgtcgccgtcgccgccgtcgc
cgcaaggggggtgccgacgccgaggacagctcgcccgacgatccgccgaacaccgtggtg
cacgagcgtgaaccgcgcagcaagaaggcacgcgacgaggtccagggcatttccggctcc
acccgtctcgaggccaagcgtcagcgccgccgagacgggcgcgatgccgggcgtcgccga
ccgcccatcctcagcgaatcggagttcctggcccggcgggaagcggtcgatcgagtcatg
gtcgtccgcgagcgcagcgccaacagcgcgatcaacggcaatggttcgggcggcaacgac
cagctggtgccgatcgaggactacacccaggtggccgtgctcgaggacggcgtgctcgtc
gagcatttcgtcaccaccgagacctcgtcgtcgatggtcggcaacatctacctgggtcgc
gtgcagaacgtgttacccggcatggaggcggcgttcgtcgacatcggacgtggtcgcaac
ggcgtgctctacgccggcgaggtcaactgggatgcggccggactggacggcggatcccgg
aagatcgagcaggcactcaagcccggcgacaacgtgttggtccaggtcagcaaggacccg
gtcgggcacaagggtgcgcggctcaccacccagatctccctggccggtcgcttcctcgtc
tacgtgcccggaggttcgtcgacggggatcagccgcaaactgcccgacgtcgaacgcaag
cgactgaagagcatcctcggcaagctggtccccgacgatgcgggcgtgatcatccgcacc
gcgtccgaaggtgtcagcgccgacgagctcgccgccgacatcgcgcgcctggaaacgcag
tggaaggacatcgacgccgcggtcggcaaggcgaagaagggctcgggcgccagcgccccg
caggccctctacgaagagcccgatctgctggtccgagtggtccgcgacctgttcaacgag
gacttcaagaagttggtcatcgagggcggcaaggcctggaacctcgtcgagcgctatatc
aatgcggtggcccctgacctgatggaacgggtggagcggttcgagaagccacacgccgac
gcgccggattcgttcgtggtgcaccgcatcgacgagcaactcgccaaggccctcgaccgc
aaggtgtggttgccgtcgggtggcacgttgatcatcgagcacaccgaggcgatgactgtc
gtcgatgtcaacaccggcaagttcaccggttccggcggcaatctggaggagacggtcacc
cgcaacaacctcgaggcggccgaggagatcgtgcggcagatgcgcctgcgcgacatcggc
ggcatgatcatcgtcgacttcatcgacatggtgctcgaatccaaccgcgatctggtgttg
cggcggctcaccgaggccctcgcccgagaccgcacgcgtcatcaggtgtccgaagtgacc
tcgctcggcctggtgcagatgacccgcaaacgcctgggcaccggtctgctggaagcgttc
tcgaccccgtgcagccattgcggcggccgggggatcgtggtgcacgccaaccccgtcgag
gcccgtcccgacgagtcgagtgggaatgacggtggcggttcgaagcgctcccggcgcaat
cggcgcaagtccgaaccggcaccggaacagcagaagccggcgcacaatccggccgagcac
ccgatgttccgggccatggccgcccacgcgcacgatcacgatcacgacgccgagggtgcg
gacggtgcgaaggacgccggcgagggtgccgagcgcacccaggccaccggcggtgcgcgg
tccggtacggacgacacacagcccgacacgagcgctgccgatcagccggtgaccggtggc
gacggcgaccgcgccgcccgaagcgacgcggacgaggcgcaacccgccaggtcgactccg
gccgagacgcccgcgcccgaagcgggcggcatcgaggcgccggagacatccggcccgacg
tccgaaccgcgggcgcggcgccgtcggcgggtggtccgacaggcggcggcgccggcggcg
tccgaaccgatcgtgatctcggccgacgagaacgtcgactcgacgccggtgacgaccttc
ggacccgccggctcgagtgccaccgcggagacggcggtcgcggtacggcgccgtccacgt
cgccgcaccgccggacgacccgcggggccgccgccgaccgagcagtga
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