Gadus morhua (Atlantic cod): 115528832
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Entry
115528832 CDS
T10832
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03250
Viral life cycle - HIV-1
Brite
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115528832 (supt5h)
RNA polymerase I system
115528832 (supt5h)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
115528832 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
115528832
NCBI-ProteinID:
XP_030193053
Ensembl:
ENSGMOG00000003422
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Position
16:complement(7826670..7844946)
Genome browser
AA seq
1091 aa
AA seq
DB search
MSDSEESDFSDNASGGSSDGEAEEVGHEEEATSPQGSDKVAEEEGEDLEEEDEYDEEEEE
DDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKVNEEAEVSNIDHAVLEDD
HSGSRRLQNLWRDSREEALGEYYMRKYAKSAGGEHHSGGSEELSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVESYKQTHVKAA
IEGVGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGDF
MIFEANRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREHN
LQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVK
VIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGEL
VQLDPQTVGVIVRLERETFQVLNMHGKVMTVRHQAVNRRKDNRFAVALDSEQNNIHVKDI
VKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTV
GGFAPMSPRISSPMHHGGGGAQQQRGGGGGGGGAGGGGGGMGRGRGRRDNDLIGQTVRIS
QGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRSSGQTSTHGRTPMFGS
QTPMYGTGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRNE
DDFDFGYGDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPY
AAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPM
TPGAPSPGAYNPHTPGSNIEQGGGDWVTPDILVRVKDSLLDLVGQQGVVRSVTGGMCSVF
IQETEKVVSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGDDGIVRMELDGQLKI
LNLRFLGRLDH
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaggagagcgacttctcggacaacgccagcggcggcagcagtgatgga
gaggctgaagaagtaggacatgaggaggaggcaacgagtcctcaggggagcgacaaggta
gcagaagaggagggtgaggatctggaggaggaagacgagtatgacgaagaggaggaagag
gatgatgacgaccgacccaggaagaaaccaagacatgggggatttattctggacgaagcc
gatgttgatgatgagtatgaggatgaagatccttgggaggagggagccgaagatattttg
gaaaaagttaacgaggaggctgaagtgtccaacatcgaccatgctgtgcttgaagacgac
cactctggctccaggaggctgcagaacctctggagggactcccgggaggaggcccttggt
gaatactacatgaggaaatacgccaagtctgcaggaggggagcaccactccggaggatct
gaggagctgtctgatgacatcacccagcagcagctacttcctggagtcaaggatcctaat
ctctggacagtcaagtgcaagattggagaggagagggcgacggcaattgctctgatgagg
aagttcatcgcctaccagtttactgacacacccctccagataaagtctgttgtagcccca
gagcacgtgaaggggtacatctatgtggagtcgtacaaacagacccatgtgaaggcagcc
atcgagggggtggggaacctgcgcatgggcttctggaaccagcagatggttcctatcaag
gagatgactgatgtcctgaaggtggtgaaggaagtgaccaacctcaagcccaagtcctgg
gtccgtctgaagagagggctctacaaggacgatatagcccaggtggactatgtggagccc
agtcagaacaccatctctctcaagatgattcctagaatagacctggaccgcatcaaagcc
aagatgagcctgaaagactggtttgcaaagagaaagaagttcaagagaccggctcagagg
ctatttgacgcagagaagatcaggtccctgggcggggaggtcagccatgacggagacttc
atgatctttgaggccaatcgttacagccggaaaggattcctcttcaagagctttgcgatg
tcagcagtgatcacagatggtgtcaagcccactctgtcagagctagagaagtttgaggac
caacctgaaggaattgacctggaggtggtcaccgagtcaggtaaggagcgtgaacacaac
ctccaggcaggggacaacgtggaggtgtgtgagggagagctgataaacctccaggggaag
atcctgagtgtggatggaaataagatcaccatcatgcccaaacacgaggacctcaaggac
cccttggagttccccgcccatgaactgaggaaatacttccgaatgggtgaccacgtgaag
gtgatcgctggccgctatgagggagacacgggcctcatcgtccgagtggaagaaaacttt
gtcatcctgttctccgacctcaccatgcacgagctgaaggtgttgcccagggacctccag
ctgtgctcggagacggcctccggggtggacgcgggggggcagcacgagtggggggaactg
gtccagcttgacccccagacggtgggggtgatcgtccgactggagagggagacattccag
gttctcaacatgcatgggaaggttatgacggtgcgccatcaagcggtcaatcggcggaaa
gacaaccgcttcgccgtggctctggactcggagcagaacaacatccacgtcaaggacatc
gtcaaggtcatcgacggaccccactctggccgtgagggggagattcgccacctgttccga
ggttttgccttccttcactgcaagaagctggtggagaacggagggatgttcgtctgcaag
acccgacacctcgtgctggctggaggctccaagcccagagacgtcaccaacttcacggtg
gggggttttgccccgatgagcccccgcatcagctcccccatgcaccacggggggggagga
gcccagcaacagagaggcggaggaggaggaggaggaggagcgggggggggaggaggtgga
atggggcgtggccgaggcaggagagacaacgatctgattggacagactgttcggatctca
caaggaccttacaaaggttacatcggtgtggtcaaggatgccaccgagtccacagccagg
gtggagctgcactccacctgtcagaccatctccgtcgaccgccagcgtctcaccaccatg
ggcgccaagaggagcagtggacagacgtcgacccacggtcgcacccctatgttcggctcc
cagacacccatgtacgggacgggctcccggacgccaatgtacggctcgcagacaccactg
cacgacgggagccgcacgccccactatggctcacagaccccgctgcatgatgggagtcga
acgcctggacagagtggcgcatgggaccccaacaaccccaacaccccctcgcggaacgag
gatgactttgacttcggctacggagacgagccttcgccgtcccctcagggctacggtggg
accccaaacccccagaccccgggataccccgaggtcccctccccgcaggtcaacccccag
tacaacccccagaccccagggaccccagccatgtacaacaccgagcagtactcgccctac
gcagccccctccccgcagggctcctaccagccgagcccctccccgcagagctaccaccag
gtggcgccctccccggtgggctaccagaacacccactcccccgccagctaccaccccaca
ccctcacccatggcctatcaggctagcccgagccccagcccggtaggctatagccccatg
accccgggggccccttccccaggggcctacaacccccacacccccgggtccaacatcgag
caggggggcggtgactgggtgacccccgacatcctggtccgggtcaaggactccttgttg
gacctggtgggacagcagggtgtggttcgcagtgttacgggagggatgtgttcagtattt
attcaggagactgagaaagtggtcagcatcagcagtgagcacctggagcctgtcaccccc
accaagaacaacaaggtgaaggtgattctgggggaggaccgcgaggcgacgggggttctg
ctgagtatcgacggagacgacggcatcgtccgcatggagctggacggacagctgaagatc
ctcaacctccgtttcctgggacgcctggaccactga
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