Gadus morhua (Atlantic cod): 115529629
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Entry
115529629 CDS
T10832
Name
(RefSeq) LOW QUALITY PROTEIN: synaptopodin-2-like
Organism
gmh Gadus morhua (Atlantic cod)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Pept_S41_N_bact
Calsarcin
Motif
Other DBs
NCBI-GeneID:
115529629
NCBI-ProteinID:
XP_030194340
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Position
17:complement(3116357..3132037)
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AA seq
1675 aa
AA seq
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MGPGEYICVTLRGGAPWGFGVREGDGDTYTPFQVYQVQEDGAAFSAGVRDYDEVVSINGE
PCEELHLPEALYLINSSTDCLQLLLKRYGSSPTGSMDPDDEEEEEEEEEEEEVRYRPTTS
PRVTLESTTLHILSAGRPHPAARDPRDLYVSQPPDGDGSPCYGAAVRDPDPEDGPPLLRR
FSPGAAVELRLSLPPDPLECTSLGSALGMEGLTCAPEDAPHPHTSTRSLYVPAPPPREPM
GQRGVVLRHAGSASGGLGQVEFTLQHPVRGGAGEAVVGGPGAGGSVGSRGTAGVEGGGGR
SEGTPPSFSVSFGVPSEEAGTVEERDRDSEGEPQEPNKHHARHARLRRNESLSEKQVKEA
KSKCKRIALLLSAAPPNPNNKGLLMFKKHRQRAKKYTLVSYGTGESEPESDGEDDADEDG
EHTVEFTLLATSDADLDGHFFTDTQTGKGVLTINWDKGLLEIEHILNNPEEMECLPDTKG
KGAVMFAQRRLRMDEITAEHEEMRRQGIPVEGLQETETKASYQQVEEHSYRQSTNESSAY
TDVAVQQQQQQQQQQQQQQQEQQQQQQEQQQQQQQEQQQQQEYQQYQERQYYEQQQQQYQ
QQQQQHQQQQQQQEQHQQQQQQLYQQQQQQLQYEQHYQQQQQQQYEQQQYLQQQSYQQQQ
HYQQQEYQQQQVKQYAATNGTVHHQTNEVQSSYANHTAKPFSVEQMTLNPYSPAMSGTNQ
DPNSQGEEIASRDERIATPAIRTGVLQDTRKRSTMFTFKEAPKVSPNPVLLNLLNRNEKK
GFEYAAEEDFLSLGAEACNFLQSTRVKHKTPPPVAPKPVISPSSLSWLQQIELTNQDQPE
LAENSVPAPAVAPTVEAAPAPEPEPNPAPAAEPSPPPAPQQAPANNHPDQEPTWIVPEPQ
TKPQPQPQFQPPPPTPPQLRAAYEEDGTRNSPTEPPAVPVKSWVPASAPAPVSAPAPAPV
PSPVPAQQHPAHSSWGSAQVQPQEPAPRHSPSPLPWVTPQPPRPQVQPSPVRNDWAPPQS
PQQAQPTWAQPQEQYQAQTINAPAAWSQPQEQCQPQTNNAPAAWARPQEKSPPLTNNPPP
WLQPREQPQPQLVQQPWNQPQQQMQGQPWAQQPQPNYQPQLPWGQQAQPVPQAQPPWVQQ
AVPQQAWAQGQGHPQPPWLAAQPQQQLDQMNAWPPSQPQQQAQPPWMQAAQTQPQAPLNP
WAPVPAQAQPQPIWAQQPQDPAQPPMHPWGPEHGHAQPQQPLAQPAPTPSPQQPNWQQPP
PQQPQPEPPLKTWSPAQAAPLAPAPWGAAPSQSTHAHVSAPVMRVAQSSPKPGTPQNDVS
PTPPQPSNPYTFHRRSSSPINPMATVLIPSASSHEMPCSRGKGADLFAKRQSRMERFIVD
SESVQANKESRCASPVASLPTEWKYSSQVRAPPPVGYNPIQSPSYPPAAIKHPPPSSPKS
KAKKKEKEKPKPAPKPLNVIEVMRHQPYQLMSSLFTYGPAAEAAEKAAAEAAEKAAAHLA
ANPNPPVQNAPMQYEQMAPVQYPGPMNAPYPGQMYGMPPHPFMQEGQYQQAPMNPYAPPN
PYQQAPSGPYYQPYPPQYQQTPPNGYQPQSPSQPYQQTPPGAYPPASNPPYQPAPYQPTE
PATPSVYVAPGTPLMSRQDSASGSSSAVAAAPKPRFMAKKASAQVWKPSVGGDDE
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgggccccggggagtacatctgtgtgaccctgcgtggcggggccccatgggggttcggt
gtgcgcgagggagacggggacacctacacaccctttcaggtctaccaggtccaggaggac
ggggctgccttcagcgctggagtgagggactacgatgaagtggtgtcaatcaacggagag
ccgtgcgaagaactccatctcccagaagccctttatctgatcaactcctccacagactgc
ttgcagctcctcctgaagaggtacggctcaagccccaccggcagcatggacccagacgac
gaagaggaggaagaggaggaggaggaggaggaggaggtgcgataccgcccgaccacatcc
ccccgcgtgaccctggagagcaccaccctccacatcctgtccgccggccgcccccacccg
gccgcccgcgaccccagggacctctacgtctcccagccccccgacggggacggctctccc
tgctacggcgcggcggtccgagaccccgaccccgaggacggtccgcccctgctccgccgc
ttctcccccggtgcggccgtggagctgcggctgtccctcccccccgaccccctggagtgc
acctccctgggcagcgccctgggcatggaggggctgacctgcgcccccgaggacgcgccc
cacccccacacctccacccgctcgctctacgtgccggccccgcccccccgcgagcccatg
ggccagcggggggtggtgctccgccatgccggctccgcctccggggggctggggcaggtg
gagttcacgctgcagcaccccgtcaggggcggggctggcgaggcggtggtgggggggccc
ggggccggcggaagcgttggatcccgggggacggcgggagtcgagggagggggcgggcgc
agcgagggaacccctccctccttctccgtctcctttggcgttccctcggaggaggccggc
actgtggaggagagggaccgcgactcggagggggaaccccaagagcccaacaaacaccac
gcccggcacgccaggctcaggcgcaacgagagcctgtccgagaagcaggtgaaggaggct
aagtccaaatgtaagcgcatcgccctgcttctctccgccgctccgcccaaccccaacaac
aaggggttgttgatgttcaagaagcatcggcagagggccaagaagtacactctggtgagc
tacggcaccggggagagcgaacccgaatccgacggcgaggacgacgcagacgaagacggc
gaacacaccgtcgagttcaccctgctggccacgagcgacgccgacctcgacgggcacttc
ttcaccgacacccagacgggaaagggcgtgctcaccatcaactgggacaaggggctactg
gagatcgagcatattctgaacaacccggaggagatggaatgtctccctgacaccaagggc
aagggtgcagtgatgttcgcgcagcggcgcctgaggatggacgagatcacggcggagcac
gaggagatgcgacgccaggggatccccgtggaggggctccaggagaccgagaccaaggcc
tcctaccagcaggtggaggagcactcgtacaggcagtccaccaacgagagtagtgcctac
acggatgtggctgtgcagcaacagcagcagcagcagcagcagcagcagcagcagcagcag
gagcagcagcagcagcagcaggagcagcagcagcagcagcagcaggagcagcagcaacaa
caagagtaccaacagtaccaggagcgacaatactatgagcaacagcaacagcagtatcag
cagcaacagcagcagcatcagcagcagcagcaacagcaggagcagcatcagcagcagcag
caacaactgtatcaacagcagcaacagcagctacaatacgagcagcactatcagcagcag
cagcaacaacaatatgaacaacagcaatatctgcaacaacagtcttatcaacaacagcag
cactaccaacaacaggagtatcagcaacagcaggttaagcagtacgctgcgaccaatggc
acagtccaccaccaaaccaatgaagtgcagagctcatatgccaatcacacggcgaaacct
ttctccgtggaacagatgaccctcaacccctactctcccgccatgagtgggaccaaccaa
gatccgaacagccagggagaggagatagcgtcccgtgatgaacgcatcgctacacctgcg
atcaggacgggcgtcttgcaggacaccagaaaaagaagcacaatgttcacatttaaagag
gcaccgaaggtgtcgcccaaccctgtgctgctgaacctcctcaacaggaacgagaagaag
ggttttgagtatgcagctgaagaagacttccttagcctaggggctgaggcctgtaacttc
ctccagtctacaagagtcaaacacaagacccctccaccggttgctccaaagcccgttatt
agcccctcctctctatcatggctgcagcagatcgaactgaccaaccaggatcagcctgag
ctcgctgaaaatagtgtgccagcacctgctgttgcccccaccgtggaggctgcccctgct
cctgaaccagagccaaaccctgcacctgctgctgagccctctcctccccctgccccccag
caggcccctgccaacaaccaccccgatcaagagcccacatggattgtcccggagccccag
accaaacctcaacctcaacctcaatttcaacctccacctcccactccaccacagctaagg
gcagcatatgaagaagacggcactagaaattctcccacagagccccccgcagtcccggtg
aaatcttgggttccagcatcagctccagcaccagtttcagcaccagcaccagcaccagtg
ccgtcaccagtaccagcacagcaacacccagctcacagttcctggggttcagctcaagtg
caaccacaggagccggctccacgccactcaccctcaccgcttccttgggtgacacctcaa
ccccctcgtccccaggtccagccttcaccagtcaggaatgactgggcaccccctcagtcc
cctcagcaagcccagccaacatgggcccagccacaagagcagtaccaagctcagacgatt
aatgctccagcagcatggagccagcctcaagagcagtgccaacctcagacgaataatgct
ccagcagcatgggcccggcctcaagagaagtcccctcctctgacaaataacccgccacca
tggctccagcctcgagagcagcctcaaccacagcttgtccagcagccttggaatcagccc
cagcaacaaatgcaagggcaaccttgggcacagcagccacagccaaattaccaacctcag
ctaccatgggggcaacaagctcagccagtgccacaggcacaaccaccatgggttcagcaa
gctgttccacaacaagcatgggcccaggggcagggacatcctcaaccaccctggcttgcg
gctcaaccccagcagcagctggatcaaatgaatgcttggcccccgtctcagccccaacag
caagcccaaccaccttggatgcaagcggcccaaacccaacctcaagctcctttaaatcca
tgggctccagtacctgcccaagcccaaccccaaccaatatgggcccagcagcctcaagac
cccgcccagccgcccatgcatccctgggggccagaacatggtcatgcccaacctcagcaa
ccgttggcccagccggctccaaccccttctccgcaacagccgaactggcaacagccccct
ccgcagcaaccacaacccgaaccacctttgaagacatggtctccagctcaggcagccccc
ctagcacctgcaccttggggggctgcaccgtcacaatcaactcacgcacatgtgtcggct
ccggtgatgagggtagctcaatcgtcccccaagcccggaactccacagaatgacgtctct
ccgactcccccgcagccctcgaacccgtacacgtttcaccggaggtcctcgtcacccatc
aaccccatggccacggtgttgattccgtccgcctcgtcgcacgagatgccctgctctaga
gggaagggcgccgacctgtttgccaagaggcagtcccgcatggagcggttcatcgtggac
tctgagtccgtgcaggccaataaggagagccggtgtgcgtcaccggtggcctcccttccg
acggagtggaagtattcatcccaagtaagagcccccccccccgttggctataatcccatt
cagtccccatcctatccccccgcagcgatcaaacatcccccaccgtctagccccaaatcc
aaagccaagaagaaggagaaggaaaaaccgaagccggcccccaaaccccttaatgttata
gaggtgatgaggcatcagccctatcagctcatgtcctccctctttacgtatggccctgca
gcagaggctgcagaaaaggcggcagcggaggctgcagaaaaagccgcagctcatcttgcg
gctaaccccaaccctcccgtgcaaaatgcgccaatgcagtatgagcaaatggctccggtc
cagtatcctggaccgatgaacgccccttaccccgggcagatgtatggaatgccacctcat
ccctttatgcaggaaggccagtaccagcaagccccaatgaatccttacgcacctccaaac
ccctatcagcaagcccccagtggaccctactaccaaccatatcccccacagtatcaacaa
accccacccaatgggtatcaaccccagtccccaagccagccctaccagcagacccccccg
ggggcttatccaccagctagcaaccctccctaccagcccgcgccctaccagcccacagag
cctgccactcccagtgtctacgtcgctcccggcacccccttaatgtccaggcaggactct
gcgtctggtagcagcagcgcagtggcggcggccccaaagccgaggtttatggctaagaaa
gcctcggcacaggtgtggaagccgagcgtaggcggcgatgatgagtga
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