Gadus morhua (Atlantic cod): 115529649
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Entry
115529649 CDS
T10832
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gmh00536
]
115529649 (col25a1)
Glycosaminoglycan binding proteins [BR:
gmh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115529649 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF4349
Motif
Other DBs
NCBI-GeneID:
115529649
NCBI-ProteinID:
XP_030194379
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All DBs
Position
17:complement(3622360..3760636)
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AA seq
677 aa
AA seq
DB search
MEREAHQKRQNPRPAVLSVFSSLCSVASMAFCVFLSINTSDVTRRIVDLESRIGEPNLIR
PVGYSVDDFNILIRDRVDELLSQRSYENLAKIRIARQADTTECNCPPGPPGKRGRRGRNG
EPGTPGSPGTQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGSPGPPG
PPGPPGPRGPPGDTGKDGPRGVAGVPGDPGTPGEVGPMGPEGATGLLGPPGLPGNDGQKG
DIGTSGMSGVDGSKGEIGEQGEKGDMGEDGMKGDGGEKGDAGSSAAGIKGEPGEPGRGGI
KGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDYGPPGKGDKGEIGTAGPK
GSPGEAGVPGFRGTKGETGDKGVFGAIGPQGPPGQKGDQGNTEIIDYNGNIQEALQKITT
FTVTGPPGPPGPLGPQGLKGDQGLPGLPGLDGERGYKGSKGDMGMPGSSGEKGTTGLPGL
PGTNGAKGDRGDSGMTGAEGPSITGLPGPLGPHGPPGPMGPHGFPGPKGDAGLHGAKGAR
GEVGHKGDRGPLGLPGASGLDGKPGTGGTDGPVGPAGPAGPKGDIGERGTSGEPGPRGPY
GLPGSAGTPGLDGLIGEKGDIGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDG
LPMPGCWQKGVTPWLVA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggagagagaagcgcatcagaagcggcagaacccgcgcccagcggtgctgagcgtcttc
tcgtctctatgttccgtggcgtccatggcgttttgcgtgtttctgagtatcaacacgtct
gatgtcacccgccggattgtggatttggagagtagaatcggcgagcccaatttgatccgt
cctgtgggctactcggtggatgattttaacatattgattcgagacagagtggacgagctg
ctgtcacagcgctcctatgaaaaccttgcgaagattcggattgcacgccaagcggacacc
acggagtgcaactgccccccaggtccaccgggaaagcgaggaagacgaggccgaaacgga
gaacccggaactccaggctctccgggtacccagggtgaaaagggggaccaaggcgaccag
gggccgcggatggttttccctaagatcaatcatggctttctttccgctgaccagcagctc
attaagagacgtctcattaagggcgaccagggccaggccggatcccccgggcccccgggg
cctccgggccccccaggaccccgaggaccccccggagacacgggcaaggacgggccccgg
ggcgttgcaggtgtaccgggcgatccaggaacgccgggagaagttgggccgatgggtccc
gagggagccacgggtttattaggaccgccagggctccccggtaacgatggacaaaaggga
gatatcggaacctcaggaatgagcggtgtcgacggctccaagggcgaaattggagagcaa
ggtgaaaagggcgacatgggagaggacggaatgaagggtgacggcggggaaaagggagac
gctggctcctccgctgcgggcatcaagggagaaccgggagagcccggaagaggaggaata
aagggagagccgggacttccaggcctgcccggacttccggggattaagggcgagcccggc
ttcttaggaccacagggggagccagggcttccagggctcccaggaaccaagggcgagagg
ggggattacggacccccaggcaagggagacaaaggagagatcgggacagctggaccaaag
gggtcaccgggagaggccggcgttcccgggttcagaggcaccaagggggagactggagac
aagggagtcttcggcgctattggcccacagggcccacctggacagaagggagatcaggga
aacacggaaatcatcgattacaacggcaacatccaggaggctctgcagaagattaccacg
tttacagtcacgggcccacccggtccgcccgggcccctgggccctcagggcctgaagggg
gatcaagggctgcctggcctgccgggacttgacggtgaacggggctacaagggttccaag
ggagacatggggatgcccggctcatctggggagaagggcaccaccggcctgcctggactt
cctgggaccaacggggccaaaggggaccggggggactccgggatgacgggcgccgagggg
ccctcgatcaccggccttccaggcccgctggggccgcacggacccccaggacccatgggt
ccccatggttttcccggaccgaagggcgacgcggggctgcacggggccaagggggcccgg
ggcgaggtcggccacaagggggaccgcggacccctggggcttcccggagcgtctggcttg
gacggcaagcccggaaccgggggcacggacggacctgtgggccctgccggacccgccggg
cccaagggagacataggggaacgaggcacctccggagagcccggtccgagaggaccttac
ggactacctggatctgccggaaccccaggcttggacggcttgattggagagaaaggcgac
attggggagagaggcgaaaagggggagaagggaaagaagggcaaaaaggggcccaagggg
gagaaaggcgaacagggcgcccccggattagacgccccctgcccgttgggccctgacgga
ctgcccatgcctggatgctggcagaagggagtcaccccctggctggtggcctga
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