KEGG   Gadus morhua (Atlantic cod): 115530959
Entry
115530959         CDS       T10832                                 
Name
(RefSeq) LOW QUALITY PROTEIN: protein transport protein Sec31A-like
  KO
K14005  protein transport protein SEC31
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    115530959
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:gmh04131]
    115530959
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:gmh02044]
    115530959
Membrane trafficking [BR:gmh04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    115530959
Secretion system [BR:gmh02044]
 Sec (secretion) system
  Eukaryotic Sec-SRP protein
   115530959
SSDB
Motif
Pfam: WD40_CDC20-Fz Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML EIF3I Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd TPR_Sec16 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_HPS5 MukF_M Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 115530959
NCBI-ProteinID: XP_030195683
LinkDB
Position
18:complement(10415435..10430650)
AA seq 1226 aa
MRLKEIQRTAHQAWSPASHHPIYLALGTSAQQLDASFNTTAALEIFEMDFADPSLDMKLK
GSLPTTNRLHSIVWVNFGLGADGTGGRLVSGSENGAITVYNVEAILESAADAVVGQSDKH
TGPVRALDFNPFQSNLLASGANDSEIYIWDLNNFNNPMTPGAKSQLIEPAEDISVVSWNR
QVQHILASANPSGKAVVWDLRKNEPIIKISDHSNRMHCSGMLWHPEVATQLVLASEDDRM
PVIQMWDLRFATSPLKVLENHTRGILSISWSQADPELLLSSAKDNRILCWNPNTGEVIYE
LPTINQWCFDVQWCPRNPALLSTASFDGKISVYSVMGGSLEGQQQSSVDKISSSFDNMDP
FGMGQTLPPLQVPQPTAQTTIVPPLKKPPKWVRRPVGASFAFGGKLVTFENPPPAPXQSP
QPVPRQVFVSQVTTETEFLQRSRELQAALQAGTFVHYCQAKIQSAPCDAEQDIWKFLMVN
FEDEARVKFLRLLGFSKDELERKISKCLGKNFQPNGHGVDAKDLAEKMQLLSTERADEAG
AVSDTGSTSPTDFFSQIPQDKPSFQIPISSDTDGLISQALLVGNFEGAVDLCLNDGRYAE
AILLSISGGEELLKKTQQRYLDTQKNSISMLISSVVTQNWRDIVQSCELDNWKEALAALL
TYAHPEEFAPLCDTLGGRLETEGTEKRSLQACLCYICSGNLEKLVECWAVQRDCSSPLVL
EDLVEKVMILRKSIERLRNSEVPLQSPTLAEKLTCYAGLLAAEGSLATAMTYLPDNSDQP
GVVSLRERLFHAQAEPPAAPAPGPDPARAAAPYSRVGVATAKPAPAPQAPAQNAQIMSQY
QPVPPAHQMVPGGQRPMPALFTPHAPGPNPVPGQPPSGHMMRPSAPRPPAPTRPSYPQHP
APGSGFPAAHQPFQPFQPQPMHMAPRPAFPPPGPSMPAAGLSGPPLPSSSSAPGGLGSMP
TPGLPPMGFMPSSSMPSAHSQGHFPSMYAPGHGHGQGHPPPPMAGAPYPPLSPGYPPGGP
GAPAVRPFSPAVKAPPPPPPTGGQDGWNDPPAVRGGPRKKKVPDNYTPPTPITAPVMGFQ
GDAGQHHDHAQVPPGAPQEPSVQLLQQLPAERVEQREIPAEHMILKSTFDSLVQRCQLAA
ADPQTKRKLEDAAKRLGYLYDKLREQSLSPSILGGLHEISRCVGGQNYQRGLEVHTQVVG
SSNFSEISAFMPILKVVMTIANKLGV
NT seq 3681 nt   +upstreamnt  +downstreamnt
atgaggctgaaggagatccagaggaccgcccaccaggcttggagccctgcttcgcatcat
cccatctacctggccctaggtacatcagcacagcagcttgatgcctctttcaacaccact
gcagcccttgagatatttgagatggattttgctgatccctcactagacatgaagctaaag
ggttccttgccaaccacaaacaggctgcatagtatcgtatgggtgaattttggattggga
gcagatggtactggaggaagactggtcagtggcagtgaaaacggtgcaataacggtctat
aacgtggaagccatactagaatctgcagcagacgccgtagtaggacaatcagacaagcac
acaggcccagtgcgagcactggacttcaacccctttcagagtaatctcctggcgtcgggg
gcgaatgattcagagatctacatatgggatctgaacaacttcaacaatcctatgacgccc
ggagccaagtcccagcttatagagcctgcggaagacatcagcgttgtctcatggaacagg
caggtgcaacacatcctggcctctgccaaccccagtgggaaagccgttgtctgggacctg
cgaaagaatgagcccatcataaagatcagcgaccacagcaacaggatgcactgctcagga
atgctgtggcaccctgaggtggccacccaattggtcctggcctcggaagacgaccgcatg
cctgtcatccagatgtgggacctgcgtttcgctacctcccctctcaaagtcctggagaac
cacacaaggggaatcctgtccatttcatggagccaggctgacccagaactcttgctgagc
agcgcaaaggacaaccgtatcctgtgctggaacccaaacacaggagaggtcatctacgag
ctgcccaccatcaaccagtggtgcttcgatgtccagtggtgtcccaggaacccggcgctg
ctctccaccgcatccttcgacggcaagatcagcgtttactctgtgatgggcggaagcctg
gaaggccagcagcagagctccgtggataagatctcctcctcgttcgacaacatggatccc
ttcggcatgggccagaccctccctcccctacaggtgccccagcccacggcccagaccacc
atcgtccccccgctcaagaagcctcccaagtgggtgcggaggccggtgggggcgtctttc
gcgttcggcggtaagctggtgaccttcgagaaccccccgccggccccgngccagagcccg
cagcccgtcccgcggcaggtgttcgtgagccaggtgaccacggagacagagttcctgcag
cgcagccgggagctgcaggcggccctgcaggccgggaccttcgtccactactgccaggcc
aagatccagagcgccccctgcgacgccgagcaggacatctggaagttcctcatggtgaac
tttgaagacgaggctcgtgttaaattcttgagacttctgggctttagcaaagatgaattg
gagcgaaagatttcaaaatgcctggggaagaacttccagcccaatggacacggagtggac
gctaaggatttggctgaaaagatgcagctgctctccacggagagggcggatgaagcgggc
gctgtatccgacaccggctccacatcgcccacagacttcttcagccagatccctcaggac
aaacccagcttccagatcccaatttcatctgacactgacgggctgatcagccaggcgctg
ctggtggggaacttcgagggcgcggtggacctgtgtctgaacgacggccgctacgccgag
gccatcctgctgtccatcagcggcggggaggagctgctgaagaagacccagcagagatac
ctggacacgcagaagaacagcatctccatgctcatctcgtcggtggtcacccagaactgg
agggacattgtgcagagctgtgagctggacaactggaaggaggctctggccgctctgctg
acctacgcccaccctgaggagtttgcccccctgtgtgacacgctgggcgggcgtctggag
acggaggggacggagaagcgctccctgcaggcctgcctctgctacatctgctccgggaac
ctggagaagctggtggagtgctgggccgtgcagagggactgctcctccccactcgtcctg
gaggatctggtggagaaggtgatgatcctgcgcaagtccatcgagcgcctgcgcaacagc
gaggtgcccctgcagagccccaccctggccgagaagctcacctgctacgccggcctcctg
gcggccgagggcagcctggccaccgccatgacctacctgcccgacaactccgatcagcca
ggggtggtgtcgctgagggagcggctgttccacgcccaggcggagcctcccgctgccccg
gcgcccggccccgaccccgcccgggccgccgccccttacagcagagtgggcgtggccacc
gccaagccggcccccgccccccaagctccggcgcagaacgcacagatcatgagccagtac
cagcccgtccccccggcccatcagatggttccgggtgggcagcgccccatgccggcgctg
ttcaccccccacgcccccggccccaaccccgtgcccggccagccccccagcggccacatg
atgaggcccagcgcgccacgcccgcccgcccccacgcggccgtcctacccccagcatccc
gctccaggatcagggttccccgctgcccaccagcccttccagcccttccagcctcagccc
atgcacatggccccgcgccccgccttccctccgccggggccctccatgcccgccgccggc
ctgtcaggccccccgctgccatcctcgtcgtccgctcccgggggcctaggctccatgccc
accccgggcctgccgcccatgggcttcatgccctcctcctccatgcccagcgctcactcc
caggggcacttccccagcatgtacgcccccgggcacgggcacggccaggggcatcctccg
ccacccatggccggggccccgtaccccccactcagccccgggtacccgcccgggggaccc
ggagcccccgctgtgaggcccttctctccagcagtcaaagctcctcctcctcctccccct
acagggggtcaagatggctggaatgaccctcctgcagtgcgcggtggacccaggaagaag
aaggtccctgataactacactcctccgacccccatcacggcccctgtgatgggcttccaa
ggggatgctggtcagcaccacgaccacgcccaagtccctccaggggccccacaggagccc
agtgttcagctcctccagcagctgccggccgagcgagtggaacaaagggagatcccggcc
gagcacatgatcctcaagagcacctttgacagcctagtgcagcgatgccaactggctgct
gcagacccccaaaccaaaaggaaactggaggatgcggccaagcgactgggatacctgtat
gacaagctgagagagcagtcgctctcccccagcatcctgggcggcctgcacgagatcagc
cgctgcgtgggggggcagaactaccagcgcggcctggaggtccacactcaggtggtgggc
agcagcaacttcagcgagatctccgccttcatgcccatcctcaaggtggtcatgaccatc
gccaacaagctgggggtctga

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