Gadus morhua (Atlantic cod): 115531090
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Entry
115531090 CDS
T10832
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115531090 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmh03400
]
115531090 (msh2)
DNA repair and recombination proteins [BR:
gmh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
115531090 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Ribosomal_L29
Motif
Other DBs
NCBI-GeneID:
115531090
NCBI-ProteinID:
XP_030195980
Ensembl:
ENSGMOG00000006533
LinkDB
All DBs
Position
18:complement(8851567..8862142)
Genome browser
AA seq
932 aa
AA seq
DB search
MAVQPKQNLSMDSAAEHGFLNSYFSMPEKPDTTFRVFDRNDYYTVHGKDALFAAKEVFKT
NGVIKNLGSGTRKLESVILSKLNFEAFVRDLLLVRQYRVEVYKNHSKNSREHDWRIAFKA
SPGNLTQFEEILFGSGAGAEGCAGVVAVKLGTGADGQRVVGVGYVDAAQRTMGVCEFPDG
EIFSNLESLLVQIGPKECLLAQGDGNSDGAKLKEVVQRGGVLVSDRKKAEFSSKDMVQDL
NRLLRTKKGETAASNTLPELDKQVAMSCLAAVVRYLELLSDESHFNSFSLTPLELGQYMR
LDNAAVQALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDRTRIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHSATLQDCHRVYQAVGHIPALVQAL
DRYSGSYQVLLEASFITPFRDMEADFSKYQEMIETTLDMNQVDHHEFLVKASFDPVLSEL
RETMDALEKSMQAVLGAAARDLGLDAGKTVKLESNAILGFYLRVTCKEEKSLRNNKKYTT
LDVQKNGVRFTNGKLSSLNEDYKKNREEYEEAQNAIVKEIITIASGYVDPLQALSDATAQ
LDAVVSLAAAAVSAPVPYVRPRLLAPEEPRRLELRQARHPCMETDADAAFIPNDISFTRG
EKSFYIITGPNMGGKSTFIRQVGVVALMAQIGSFVPCESAELHVVDSVLARVGAGDSQVK
GVSTFMSEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEHVASRIGCFCLF
ATHFHELTALAAQYPAVRNLHVTALTAQGTLTMLYRVKPGVCDQSFGIHVAELACFPPSV
VAMAKEKAAELEEFQEPADEEAGPDAKKRCTDKLAGENMIQDFLEQVKSLPAATMSDDEL
KAKLRSMKEELMTKNNGYICDILANCGPAIKS
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcagaatctgtctatggacagcgcagctgaacatggctttctt
aactcttacttctccatgccggagaaaccagacaccactttccgagtgttcgatcgcaat
gattactataccgtgcatggtaaagatgctctattcgctgcgaaggaggttttcaagacg
aacggggtcatcaagaatctgggctcagggacccgcaagttggagagcgttatcctcagc
aagctcaactttgaagccttcgtgcgggacctgctgctggtgaggcagtaccgagtggaa
gtttacaagaaccacagcaagaacagcagggagcacgattggagaattgccttcaaggct
tctcccggcaacctgacccagtttgaggagatcctgtttgggagtggggccggtgcagag
ggctgcgccggggtcgtggcggtgaagctgggcacgggcgccgacggacagcgcgtggtg
ggcgtcggctacgtggacgccgcccagaggaccatgggggtgtgcgagttcccggacggc
gagatcttctccaacctggagtccctgctggtccagatcggccccaaagagtgtctcctc
gcgcagggggacgggaacagcgacggcgccaagctcaaggaggtggtgcagcgtgggggt
gtcctggtgtctgacaggaagaaggcggagttcagtagtaaggacatggtgcaggacctc
aaccggctcctgaggaccaagaagggggagacggccgccagcaacaccctgcccgagctg
gacaagcaggtggccatgtcgtgcctggctgccgtagtccgctaccttgagctcctgtct
gacgagtcccacttcaactccttcagcctgacgcctctggagctcggccagtacatgagg
ctggacaacgctgccgtgcaggccctcaacctcttccagggttcacccgacgacaccagc
ggagctcattcattggccggtcttctgaacaagtgccgcacccctcaaggccagcgattg
gtcaaccagtggatcaagcagccactgatggacaggaccaggatagaggagaggctggac
cttgtggagagcttcgtgtgcgactctgagctgcggcagacgtgccaggaggacctgctg
cgccgcttccctgacctccaccggctggccaagaagttccacaggcactcggccacgctg
caggactgccaccgcgtgtaccaggccgtgggacacatccccgccctggtgcaggccctg
gacagatactctggcagctaccaggttctgctggaggcgtcgtttatcaccccgttccga
gacatggaggcggacttcagcaagtaccaggaaatgattgagaccacgctcgacatgaac
caggtggaccaccatgagttcctggtgaaggcctcgttcgacccggtgctcagtgagctg
cgggagaccatggatgcgctggagaagagcatgcaggcggtgctgggggcggcagcaagg
gacctgggcctggacgccggcaagacggtgaagctggagtccaacgccattctgggcttc
tacctcagggtcacctgcaaggaggagaagagcctgaggaacaacaagaagtacaccacg
ctggacgtccagaagaacggcgtgcgcttcaccaacggcaagctgagctcgctaaacgag
gactacaagaaaaaccgggaggagtacgaggaggcccagaatgccatcgtcaaggaaata
atcaccatcgcctcaggctacgtggaccccctgcaggcgctgagcgacgccacggcccag
ctggacgcggtggtgagccttgcggcggcggcggtctcggcgcccgtgccctacgtcagg
ccccgcctcctggcgccggaggagccgcggcggctggagctgcggcaggcgcgccacccc
tgcatggagacggacgccgacgcggccttcatccccaacgacatcagcttcacccgcggc
gagaagagcttctacatcatcacagggcccaacatggggggcaagtccaccttcatccgg
caggtgggcgtggtcgcgctcatggctcagatcggcagcttcgtgccgtgcgagagcgcc
gagctgcacgtggtggacagcgtcctggcccgggtgggtgccggggacagccaggtcaag
ggggtgtccaccttcatgtcggagatgctggagaccgccgccattctgaggtcggccacg
gaggactccctcatcatcatcgacgagctgggccgcggcacctccacctacgacggcttc
ggcctggcgtgggccatcagcgagcacgtggcctcgcgcatcggctgcttctgcctgttc
gccacgcactttcacgagctgacggcgctggccgcgcagtaccccgccgtgcgcaacctg
cacgtcacggcgctcaccgcccagggcacgctcaccatgctgtaccgcgtgaagccaggt
gtgtgcgaccagagtttcgggatccacgtggccgagttggcctgcttcccgccatctgtg
gttgccatggcgaaagagaaggcggcagagctagaggagtttcaggagcctgcagatgag
gaggcggggcctgatgccaagaaacgctgcacagacaagctggccggcgagaacatgatc
caggacttcctggagcaggtgaagtcactccctgccgccaccatgagcgacgatgagctg
aaggcaaagctccggagcatgaaagaggagttgatgaccaaaaacaacggttacatctgc
gatattctggccaattgtgggccagccatcaagagttag
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