Gadus morhua (Atlantic cod): 115531340
Help
Entry
115531340 CDS
T10832
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03430
Mismatch repair
gmh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115531340 (pms2)
03460 Fanconi anemia pathway
115531340 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmh03400
]
115531340 (pms2)
DNA repair and recombination proteins [BR:
gmh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
115531340 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
115531340
NCBI-ProteinID:
XP_030196399
Ensembl:
ENSGMOG00000004275
UniProt:
A0A8C5AMX8
LinkDB
All DBs
Position
18:complement(13563228..13571386)
Genome browser
AA seq
870 aa
AA seq
DB search
MNEECSEPAGAIKAIDRHSVHQICSGQVVLTLATAVKELVENSIDAGSTNVDVRLKDNGA
ELVEVSDNGKGVEEANFEGLTLKHHTSKIREFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHESAQVGTKLVFDHNGHLVQRCPHPRQQGSTVSLGQLFYTLPVRHKEFQRNIKKEFTK
MIHVLQSYCIISTGVRITCSNQTGQGKRSPVLNTSGSPCMRDNIGAVYGPKQLQSLLPFQ
QLRPTDVVKEDYGLTNAELPEELFTITGFVSRGDHGVGRSATDRQFFFINKRPCDPSKVT
KIVNEVYHMYNRHQYPFVALNIAVASECVDVNVTPDKRQIFLQEEKLLLAILKTSLMAMY
ESGVNKISLNHKPSNLSNNSLTSVQPRPVSARHQADPSDGELVVEPREEDEHKVQRPRSS
LNMAGLRAAFSSHTKRGQESPASGGSKQKTLQSFFKGSEKAATHVHIQSPVKPLREATRS
SPAGRSSLDAFRYGKTQDGDIEDSGRGSSLSECDSQTTATPESPRCSSEATPPDKHPCIA
DVLASEEPLDQHCSEPEAQGTKTEPSTSREEDPAPGPDSKRARTQGSQDSVGSSAGPEPT
KRDSSRSSLSKVDAPVSLQKRTAPLRFCFQELASRLRRLNELQRQMDSDRLKYRRFRAKI
SPGENQSAEDELRKEISKDTFKDMEIIGQFNLGFIITKLNSDIFMIDQHASDEKYNFEML
QQHTALQGQRLIAPQKLHLPAVSENVLMENVDIFQKNGFDFLIDEEAQVMERVKLVSLPT
SKNWTFGPADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALSVSEMKKLVV
HMGEIEQPWNCPHGRPTMRHLVSLDVLSQD
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagagtgctcggaacccgctggagctatcaaagctatagacaggcactcagtg
caccagatatgctcagggcaggtggtgctaaccctggcaactgctgtcaaagagctggtc
gagaacagcatcgatgcgggctctaccaatgttgatgttagactgaaagataatggagct
gaacttgtagaagtgtcagacaatggcaaaggagtagaggaagccaactttgaaggactg
acattaaagcatcacacttcgaagattcgagagttctctgacctcattcacgtggaaacg
tttggcttcagaggggaagctctcagctcattatgtgctctgagtgacctgagcgtggtg
acctgccatgagtctgcccaagtgggcaccaagctggtgtttgaccacaatggtcacttg
gtccagcgctgtcctcacccccgccagcagggctccactgtcagcctggggcagctcttc
tacaccctgcccgtccgtcacaaggagttccagcgcaatatcaaaaaggaattcaccaag
atgatccatgtcctccagtcctattgtatcatctccactggggtgaggataacatgctcc
aaccagacaggacaggggaaaaggagtccggtgctcaacaccagtggaagcccctgcatg
agggacaacataggggctgtttacggacccaaacagctgcaaagtctgctaccattccag
cagcttcgcccgacggacgttgttaaagaagactatggactcactaacgcagaactcccc
gaagagctcttcacgatcactgggtttgtgtcgaggggagaccatggcgtgggaaggagt
gccactgaccggcagttcttcttcatcaataaacggccgtgcgatccttccaaggtgacc
aagatcgtgaatgaggtgtaccacatgtacaaccgccaccagtatcccttcgttgccctg
aacatcgcagtggcttcagagtgcgttgacgtgaacgtcaccccagacaagcggcagatc
ttcctgcaggaagagaagctccttctggccatcctgaaaacctccctcatggccatgtat
gaatcaggggtcaacaagatcagcctcaaccacaaaccctccaatctcagcaacaatagc
cttacatctgtgcagccaaggcccgtctcagcacgacatcaggctgatccatctgatggt
gagttggtggtggagcctcgagaagaggatgaacacaaggtccaaaggcccaggtcctcg
ctcaacatggcagggctgagggctgccttctccagccacaccaaacggggccaggagagt
cctgcgagtggtggctccaaacagaagacactgcagtcctttttcaagggctcagagaag
gccgccactcacgtccacatccagtcgcccgtgaaacctctcagagaagccactagatct
tccccggcggggcggtcgtcactcgatgcgttccggtacgggaagactcaagacggcgac
atagaagactccggcagaggcagctctctgtctgagtgcgactcccagaccaccgccacg
cccgagagcccgcggtgcagttcggaggccaccccgcccgataaacacccctgcatcgca
gacgtcctggcgtccgaagaacccttggaccagcactgctcggagcctgaagcccagggg
accaagacggagccgtctacctcccgggaggaggaccccgcccctggtcctgactccaag
agagccaggacccaggggagccaggactctgtcggttcctccgccggacctgaaccgacc
aagcgcgacagttccagatcctccctctcaaaggtagatgctccggtcagcctccagaag
aggacggcaccgctgaggttctgcttccaggaactggccagtcggctgaggaggctgaac
gagcttcagaggcagatggacagcgaccgcttgaagtacaggcgcttcagggccaagatc
agcccgggggagaaccagagtgctgaggatgaactgaggaaggagatcagtaaagacaca
ttcaaggacatggagatcatcggtcagttcaacctgggattcatcatcaccaagctgaac
tccgacatcttcatgatcgaccagcacgcctcggacgagaagtacaactttgaaatgctg
caacagcacaccgcgctccaagggcagagactcattgcaccacagaagcttcatctcccg
gcagtcagcgagaacgtcctcatggaaaacgtggacattttccagaagaatggtttcgat
ttcctaatcgatgaggaagcccaggtgatggagcgggttaagctggtgtcgctgcccacc
agtaagaactggacgtttgggcctgcggacatcgaggagcttatcttcatgctgagcgac
agcccgggggtcatgtgtcggccgtctcgtgtcagacaaatgtttgcttcccgcgcttgt
cggaaatctgtaatgatcggcacggccctcagtgtctccgagatgaagaagctggtggtc
cacatgggagagatagagcagccctggaactgtccccacggccggcccaccatgaggcac
ctggtcagcctggacgtcctctcacaggactga
DBGET
integrated database retrieval system
