Gadus morhua (Atlantic cod): 115531935
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Entry
115531935 CDS
T10832
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03013
Nucleocytoplasmic transport
gmh03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115531935 (upf2)
mRNA cycle factors
P-body specific factors
115531935 (upf2)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
115531935
NCBI-ProteinID:
XP_030197159
Ensembl:
ENSGMOG00000005557
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Position
19:11188242..11209205
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AA seq
1283 aa
AA seq
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MPAERKRSINMDEKEVSSFSSKEREKERERDGERRLPRDKAKDDKMSGGKKDGGAKAAAA
EEKRKRLEEEKRKREEKDRKKKEEEKQKAEEEQRKKEEEEKRLQEEQEKKLQEEEEKRQR
EEEAAQLKEKEESHQLHQEAWERHHSRKELRSKNQNIQEGRPEEAFFSRLDSSLKKNTAF
VKKLRTLTEQQRDSLSTDFGALNLSKYIGEAVASVVEAKLKISDVGCSVHLCSLFHQRYA
EFAPLLLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTVVGLFTDREGLSLIYEQLKSI
ISVDREMHTHVSVVISFCKHCGDDIAGLVPRKVKLAADKFALAFPPSEIISVEKQTPFQN
LLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATSYQKLLANTQ
SLADLLDENMPELPQDKTVQEEHGPGIDIFMPGKPGEYDLEGGIWEDEDARNFYENMVDL
KAFVPAILFKDNEKSGQAKEREEAKEAKEAKEAAVAAAATTEELELELEALDIAEDPLEL
EGPEETENEELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFC
MNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHI
RKKDQINIETKNKTVRFIGELAKFKMFSKTDSLHCLKMLLSDFSHHHIEMACTLLETCGR
FLFRSPESHLRTSVLLEQMMRKKQAQHLDARYITMVENAYYYCNPPPMEKTVRKRRPPLQ
EYIRKLLYKDLSKVTTEKVLRQMRKLPWQDVEVKSYLICCMVNIWNVKYNSVHCVANLLA
GLVAYQEDVGVHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRT
LFSFISFGVNPDGGPGPLDPPEHLFRIRLVCTLLDACGQYFDRGSSKRKLDCFLIYFQRY
IWWKKSLDVWTKDHPFPIDMDYMISDMLELLRPKMRLCSSLEEASRQVSDLEHEVLVKLG
LAIEKDGRCPSSLSESEALDEEDEDGDEEEEGGAETEEQSGNESEINEHEEEEGSEREEE
EEEENTDDLTDSNKENETDEENNDVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSG
EVVKVHQLDVAIPLQLKSQLKKGGPGGPGEGDGGDISDSMQFVMLTRKGNKQQYKILNVP
LSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERR
PRYQHPKGAPNADLIFKTGGRRR
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcggaacgcaagcgatcgatcaacatggacgagaaggaggtgagctccttcagc
agcaaggagcgcgagaaggagagggagcgggacggcgagcgaaggctaccgagggacaag
gccaaggacgacaagatgagcggcggcaagaaggacgggggcgcgaaggcggcggcggcc
gaggagaagaggaagcgtctggaggaggagaagcgcaagagggaggagaaggaccgcaag
aagaaggaggaggagaagcagaaggctgaggaggagcagcggaagaaggaggaggaggag
aagaggctgcaggaggagcaggagaagaagctccaggaggaggaggagaagcggcagcgg
gaggaggaggcggcgcagctgaaggagaaggaggagtcccaccagctgcaccaggaggcg
tgggagcgccaccacagcaggaaggagctccgcagcaagaaccagaacatccaggagggc
cgccccgaggaggccttcttcagccgcctggactccagcctcaagaagaacacggcgttc
gtcaagaagctgcgcacgctcaccgagcagcagcgcgactcgctctccaccgactttggc
gcgctcaacctcagcaagtacatcggcgaggcggtggcctccgtggtggaggccaagctg
aagatctcggacgtgggctgctcggtgcacctctgctccctcttccaccagcgctacgcc
gagttcgccccgctgctgctgcaggcgtggaagcggcactttgaggcgcgcaaggaggag
aaggcgcccaacgtgagcaagctgcgcacggacctgcgcttcatcgccgagctcaccgtc
gtgggcctcttcacggaccgcgagggcctgtccctcatctacgagcagctcaagagcatc
atcagcgtggaccgcgagatgcacacgcacgtctccgtggtgatcagcttctgcaagcac
tgtggcgacgacatcgccggcctggtgccgcgcaaggtgaagctggccgccgacaagttc
gccctggcgttcccgcccagcgagatcatcagcgtggagaagcagacgcccttccagaac
ctgctgagggagtacttcacgtcgctcaccaagcacctgaaaaaggaccaccgcgagcta
cagaacatcgagaggcagaacagacgtattctccactccaagggcgagctcagtgaggac
cggcacaagcagcacgaggagtttgccacttcctaccagaagctgctcgccaacactcag
tccctggctgacctgctggacgagaacatgcccgagctgccccaggacaagaccgtccag
gaggaacacggccccggcattgacatcttcatgcccggtaagccaggagagtacgacctg
gaggggggcatctgggaggacgaggacgcccgcaacttctacgagaacatggtggacctc
aaggccttcgtgcccgccatcctcttcaaggacaacgagaagagcggccaggccaaggag
agggaagaggccaaagaagccaaagaggcgaaggaggcggcggtggcggcagcggcgacc
acggaggagctggagctggagctagaggccctggacatcgccgaggaccccctggaactg
gagggccccgaggagacggagaacgaggagctggccaagaaactgttggacgagcaagag
caagaagatgaggaggccagcactggctcccacctcaagctcatcgtggatgccttcatc
cagcagcttcccaactgtgtgaaccgggacctcattgacaaggccgccatggacttctgc
atgaacatgaacaccaagtccaacaggaggaagctggtgcgagccctcttcaccgttccc
agacagaggctggatctgctccccttctactcccgcttggtggcgacccttcacccctgc
atgtccgatgtggccgaggacctttgctccatgctcaagggagacttcaggttccacatc
cgtaagaaggaccagattaacattgagaccaaaaacaagacagtgaggttcatcggagag
ctggccaagttcaagatgttctccaaaacagactcactccattgtctgaagatgctactg
tcagacttctcccaccaccatatagagatggcctgcaccttgctggagacctgtggccgc
ttcctcttcagatccccggaatcccacctgcgcactagcgtcctcctggagcaaatgatg
cgcaagaagcaggcgcagcacctggacgcgcgctacatcaccatggtggagaacgcctac
tactactgcaacccgccccccatggagaagacggtgcgcaagaggagacccccgctgcag
gagtacatccgcaagctgctctacaaggacctgtccaaggtcaccaccgagaaggtgctg
aggcagatgcgcaagcttccctggcaggacgtggaggtgaagagctacctgatctgctgc
atggtgaacatctggaacgtcaagtacaacagcgtccactgcgtggccaacctgctggcc
ggcctcgtggcctaccaggaggacgtgggcgtgcacgtggtcgacggcgtgctggaggac
atccgcctgggcatggaggtcaaccagcccaagttcaaccagcgccgcatcagcagcgcc
aagttcctgggcgagctgtacaactaccgcatggtggagtcggcggtcatcttccgcacc
ctcttctccttcatctcgttcggggtgaaccccgacggcggccccgggcccctggacccc
cccgagcacctgttccgcatccggctggtgtgcacgctgctggacgcctgcggtcagtat
tttgaccgcggctccagcaagcgcaagctggactgcttcctcatctacttccagcgctac
atctggtggaagaagagcctggacgtgtggaccaaggaccacccgttccccatcgacatg
gactacatgatcagcgacatgctggagctgctgaggcccaagatgaggctctgctcctcc
ctggaggaggccagccggcaggtcagcgacctggagcacgaggtgctggtcaagctaggt
ctagccattgagaaggacggccggtgtcccagctccctgagcgagagcgaagcgctagat
gaggaagacgaggatggcgatgaggaggaagagggcggggccgagaccgaggagcagtcg
ggcaacgagagcgagatcaacgagcacgaggaggaggagggctcagagagggaggaggag
gaggaggaagagaacacagacgacctgacagactccaacaaggagaacgagacggatgag
gagaacaacgatgtgaccatccgaggagggggtctgaagcacgtggcgtgtgctgaggac
gaggacttcatccaggccctggataagatgatgctggagaacctgcagcagcgcagcggg
gaggtggtgaaggtgcaccagctggacgtggccatccccctgcagctaaagagccagctg
aagaaggggggtccggggggccccggggagggggacggcggcgacatctcggacagcatg
cagttcgtcatgctcacgcgcaagggcaacaagcagcagtacaagatcctgaacgtgccg
ctgtcgtcccacctggccgccaaccacttcaaccagcagcaggcggagcaggaggagcgc
atgcgcatgaagaagctcacgctggacatcaacgagaggcaggagcaggaggactaccag
gagatgctgcagtccctggcgcagcggcccgctccggccaacaccaaccgggagcggcgt
ccgcggtaccagcaccccaagggggcacccaacgctgacctcatcttcaagacgggagga
aggagacgctga
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