KEGG   Gadus morhua (Atlantic cod): 115531987
Entry
115531987         CDS       T10832                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115531987 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gmh03041]
    115531987 (prpf4)
Spliceosome [BR:gmh03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    115531987 (prpf4)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_EML PRP4 WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_DCAF4 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_EIPR1 WD_LRWD1 Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR11_1st Beta-prop_WDR19_1st WD40_like Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N NYD-SP28
Other DBs
NCBI-GeneID: 115531987
NCBI-ProteinID: XP_030197249
Ensembl: ENSGMOG00000014056
LinkDB
Position
19:complement(2945858..2961184)
AA seq 516 aa
MSDDEDAPRTAKRTRIYYGSLEGQERQRMGREAGGGTKGGSAAIKAGIKAGNINISSGEF
LEIEDRSASGPSGERQSDVLVEFERRRRARHLAISTDDSEVKGCLRRLGEPITLFGEGPA
DRRERLRAVLSVVGGDALSKSKKDAESSRPRPQDERQETWYHEGPASLKEARLWMAKFSL
PRAVKRLDEARIQKEVSESARTIRQQELHKNLQNLNNFCSQIGDDRPISYCQFSPDSKML
ATGSWSGLCKLWSVPDSQLVRTLRGHNTSVGAVVFRPGSTLSLEKSDVNLASCSTDGVVK
LWNLQSDEPVADIEGHMSRVSRLAWHPSGRFLGTACYDNSWRLWDLELREEILHQEGHSK
GVHDLHFHPDGSLALTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYSVCFSPNGWHAATGS
GDHTCKVWDLRTRKCIYTIAAHQNLLSSVRFQPTDGHFLLTGAYDNTAKAWSHPGWSPMK
TLAGHEGKVMGVDISPDGGLIATCSYDRTFKLWLSE
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgtctgacgatgaagatgctccacgcaccgccaagcgcacgcggatctactacggaagc
ctggaggggcaggagagacagcggatgggccgagaggctggaggcgggactaaaggagga
agtgctgccatcaaggccggcatcaaggctggaaacatcaacatctcttcaggggagttt
ctggagatcgaggaccgcagtgccagcgggccgagtggggagcggcagtccgatgtgttg
gtggagtttgagcgccgccgtcgcgcgcgccacctagccatctccactgatgacagcgag
gtcaaaggttgcctgcggaggcttggcgagccaatcactctctttggggaggggccagcc
gaccgccgggagaggctgagggctgttctttcagttgtcgggggtgacgccctcagcaaa
tccaaaaaggatgcggagagctctcgaccacgcccccaagatgagcgccaggagacttgg
taccacgaaggccccgcctccctcaaagaagctcgtctctggatggccaagttctcccta
cccagagctgtaaagaggttggacgaggcccggatccagaaggaagtatctgaatccgcc
cgtaccatccgccagcaggagctccacaagaacctgcagaatctgaacaacttctgctct
cagatcggagacgaccgtccgatctcctactgtcagttcagccctgactccaagatgctg
gccacgggctcctggagcggtctttgtaagctgtggtcagtgcccgacagccagctggtc
cggaccctcagaggtcacaacaccagtgtgggggcggtggtgttcaggcccggctccacc
ctctcactggagaagtccgacgttaacctggcgtcgtgctccaccgacggggtcgtgaag
ctctggaacctccagagtgacgagccagtggccgacatcgagggtcacatgtcgcgagtc
tcccgcctcgcctggcacccttctggaaggttcctgggaaccgcctgctatgacaactcg
tggcgtctgtgggacctggagctccgggaggagatcctgcaccaggagggtcacagtaaa
ggagtccacgacctccacttccacccagacggatctctggccctcactggcggactggac
gccttcgggcggctgtgggacctccgcactgggcgctgcatcatgttcctggaaggacat
ctgaaggagatctacagcgtctgcttctctcctaacggttggcatgcggctacaggaagt
ggtgatcacacctgcaaagtgtgggacctgcgcacccggaagtgcatctacacaatcgcc
gcccaccagaacctcctgtcctctgttcgattccagcccaccgacggtcacttcctgttg
acgggcgcctatgacaacacagcaaaggcctggagtcatcctggttggtcgcctatgaag
accctggcaggacacgagggaaaggtgatgggcgtggacatttcccctgatggtgggctg
atcgcaacctgttcctacgaccggacctttaaactctggctctcagagtaa

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