Gadus morhua (Atlantic cod): 115532663
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Entry
115532663 CDS
T10832
Name
(RefSeq) LOW QUALITY PROTEIN: mRNA-decapping enzyme 1B-like
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115532663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115532663
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115532663
mRNA degradation factors
5'-3' decay
Decapping complex
115532663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
Motif
Other DBs
NCBI-GeneID:
115532663
NCBI-ProteinID:
XP_030198402
LinkDB
All DBs
Position
19:complement(18453952..18472075)
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AA seq
762 aa
AA seq
DB search
MTATSAGGSTCLTTKGLDISLAALRRQDPYINNIVDVASQVALYTFNNRTNEWEKTEVEG
TLFVYTRLASPRHGFTIMNRLSMENLTEPITKELDFQLQDPFLLYRNARFVIHGIWFYDK
QDCQRIAQRMKTLTQQEQALAQSQSQGGGPLPPGGGVAAGGGGGGGEVGGGVEGHPVDIL
QMLAKARNEYDKGGQSSSEPKEIGGSSMLFGNPHLIKPIPVKTYHSGRGPWGAPVLSLST
LCRLPAPPPVALGHHGGPSPPGPPPVGSAPASAAVPPSGSARDRGAGRRGALLSYDDPVG
APKAVRAQPRPPPALSPXKAPMMGDGGALLGRAPNAAVRGPVAVGPPGSPYSAYVVAGAQ
GRHTGPLQPHLPPQPQQPPQQGQGQLCPAIQKLIQGPRGQGGPPPPPGPRLAAHRVGVPR
EPAVXQRADAGAAAAPPTPAPPPAPPAPAAPPAPAAPPPAPITSTNSTSTNHHNRSSTSR
SITESTADHIQRLFQAQAQAQAQALVQAQAQAQAQAQAQAQALAQAQAQAQALVQAQVPV
STAPCCSNPPPPLIPSMQHPMQPITAESVSYPTPSTTSMSTFTRAKPLSDNRGAPSSQQA
PGTSSTMPGVAPHELLQKLQLVHQEQGQTPHEARATAQGSPLDSRVPLQLKTQAPPWALA
IRRPCDSRIIIVASPQRIPATVAPTLLLSPSVFSQAKAAGPPQDGGPAPGPPAPRPPAPE
EAPVLSRGQLQDTLLHLIRTDSSFIDCIYKAYIGGLARDSQF
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgacttcagcgggcggcagcacctgtctcaccaccaaaggactggacatcagt
ctggccgctctgcgcagacaagacccctacatcaacaacattgtagacgtggccagccaa
gtcgctttgtatacttttaacaacaggacgaatgagtgggaaaagacagaggtggagggg
actctgtttgtctatacaagactggcatctccgaggcatggcttcaccatcatgaacagg
ttgagtatggagaacctgacagaaccaatcacaaaggagctggacttccagctccaagac
ccattcctcctctaccgcaatgcacgctttgtcatccatgggatctggttctacgataaa
caagactgccagcgcattgcccagcggatgaaaactctgacccagcaggagcaggccctg
gcccagtcccagtcccagggggggggccctctgcccccagggggaggcgtcgcagcaggg
gggggaggaggaggaggagaggtgggaggaggtgtggaaggccatcctgttgacattctg
cagatgctggccaaagcacgcaacgagtacgacaagggaggacagtctagttcagagcct
aaggagattggaggcagtagcatgctatttgggaacccccacctcatcaaaccaattcca
gttaaaacctatcactcaggacggggaccctggggagccccggtcctctctctgtccacc
ctgtgtcggctcccagcccccccacccgtcgccctcggccatcacgggggcccctctccc
cccggcccccccccagttggctccgcccccgcgtccgccgccgtcccaccctcgggttcc
gcaagagaccggggggccggccggcgtggcgcgctcctctcctacgacgaccccgtgggg
gcccccaaagccgtgcgggcccagccgcggccgcccccagcgctctccccctgaaaggcc
ccgatgatgggggacggcggggccctcctcgggagagcgcccaacgctgcggtgaggggc
cccgtcgcggtggggccccccgggtctccctactctgcgtacgtggtcgccggggcccag
ggccgccacaccgggcccctccagccccatctgcccccccagcctcagcagcccccccag
cagggccaggggcagctctgccccgccatccagaagctgatccaggggcctcggggccaa
ggaggacccccgccgccgccggggccccgcctcgctgcacaccgtgtcggagtcccccga
gaaccggctgtgtgacaacgggctgacgctggagcagcagcagcaccaccaacaccagct
ccaccaccagcacctccagcaccagcagcacctccagcaccagcagcacctccaccagca
cccatcacctccaccaacagcaccagcaccaaccaccacaaccgctccagcaccagccgc
agtatcacagagtccacagcagaccacatccagagactcttccaagcacaggcccaagcc
caagcccaagccctggtccaggcccaggcccaggcccaggcccaggcccaggcccaggcc
caggccctggcccaggcccaggcacaggcccaagccctggtccaggcccaggtccctgtc
tctaccgccccctgctgctccaacccccctccccccctcatcccctccatgcaacacccg
atgcaaccaatcacagcggagtctgtctcctatcccacccccagcacaaccagcatgtct
actttcacccgtgcaaagcccctctccgacaaccgcggcgcccccagcagccagcaggct
ccagggacgtcctccaccatgccaggcgtggccccccatgagctgctccagaagctccag
ctggtgcaccaggaacagggccagaccccccatgaggcccgcgccacggcccagggttcg
cccctcgattccagggtcccgctccaactcaagacccaggctccgccctgggccctggcg
ataaggaggccatgcgattcccggatcattattgtcgcctccccccagcgcatcccggcc
accgtggcccccacgctgctcctctcgcccagcgtcttctcccaggccaaggcggcgggg
cccccccaggacggcggccccgccccgggcccccccgccccgcgcccccccgccccggag
gaggccccggtgctgtccaggggccagctgcaggacaccctgctgcacctcatacggacg
gacagctccttcatcgattgcatctacaaggcgtacatcggcggcctggctagagacagc
cagttctga
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