Gadus morhua (Atlantic cod): 115532854
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Entry
115532854 CDS
T10832
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04382
Cornified envelope formation
gmh04510
Focal adhesion
gmh04512
ECM-receptor interaction
gmh04518
Integrin signaling
gmh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115532854 (col4a2)
04518 Integrin signaling
115532854 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115532854 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115532854 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115532854 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmh04147
]
115532854 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
gmh00536
]
115532854 (col4a2)
Exosome [BR:
gmh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115532854 (col4a2)
Glycosaminoglycan binding proteins [BR:
gmh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115532854 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115532854
NCBI-ProteinID:
XP_030198694
LinkDB
All DBs
Position
20:complement(918181..947335)
Genome browser
AA seq
1642 aa
AA seq
DB search
MQIAIDVLLWRPLLSASCTDSNWSLSLVQGQTGPVGPQGLGGPPGRAGEVGIMGPKGELG
ERGRGGALGPKGSVGMMGVPGFTGADGIPGHPGTAGPRGRPGVDGCNGTNGDPGRSGRPG
REGPPGYSGQTGRKGSKGDELDLHVFMERFRGDRGSPGAPGPHGQSGGTGWPGYRGLTGP
KGPCGPPGPPGPKGTMTKVLKGVKGERGDAGEQGPTGNSTTRPHTGSKIGSQGRRGEKGL
KGEVGEVSDNKGEAGVTGGPGGRGEHGLYGLPGPKGYPGEAGPIGRDGVKGTRGDPGDVI
SSGFWGTGGPTGPAGETGHKGARGPEGDQGPPGPSGRPAGESQQLLWDFFGPFGDKGDSG
DKGQPGKAGIPAISPGPQGYSGLPGPPGPPGPKGSWLEFFKGAPGQRGRPGSAGSKGDTG
DHGRCECSNVHSKPGPPGAAGEQGSIGMSGEIGQQGDDGEEGPQGASGLPGFPGPSGLQG
PKGRRGSTTSALQKGYPGDPGEAGPSGSPGVQGVPGHLGTPGFPGARGSQGEGPVGEPGD
RGYCGSQGPQGAAGLRGDPGQVLGASKGLQGPPGDQGLPGYDGVEGPRGSSGGCTPREDG
GQYDVTGDCDVTPGPPGLPGFPGPTGLEGMPGPPGHHGAEGLKGGRGDKGERGEQGRGGL
PGNKGFVGPRGDLGQLGAPGVKGYPGVNGIPGRDGGPGAKGKHGEIFGASTGGPGEPGLP
GLQGDQGPAGEQGGSGHQGMGGMPGIIGLKGAGGPPGLQGEEGRPGPPGRYDFPGPPGRT
GPPGPHGVEGEPGLSGERGAEGDAGAPGPAGLKGTPGGFGEEGPNGDQGATGGQGVPGPD
GRPGISGVKGSKGSHGMEGFKGRPGAQGAPGFSGVKGETGLPGQGGLKGGMGRGGEKGDR
GLMGPPGDKPHIPRQIIADMKGTKGEDGHLGDPGFTGARGPKGYPGLPGYEGLHGHPGDP
SHEKGLHGNRGAEGLLGPKGTPGLTGTRGIGGFDGMNGNQGQKGSPGAYGASGDYGKSGF
KGDKGQRVDLPGSTGLRGELGFAGPLGEKGLSGRPGDSGSPGFNGIEGRTGELGDPGIGG
APGSDGQAGSPGTQGQRGWPGTPGEGGTPGVYGLPGEKGFPGLKGLYGLHGLTGQKGLTG
LQGPDGSGTPGNPGAKGQKGETGVPNSQPGVPGVVGETGLQGPPGDQGQPGPPGFQGPQG
QDGVPDGPGPPGSPGYPGPKGLLGFPGQRGVPGLEAPPGEKGVVGGFGAPGLPGAKGLRG
DPGPAGYRGYNGESGRKGVKGEQGLMGIPGRGGNQGGRGPTGPKGSSGPTGVPGLPGSPG
PLPLPLTIPAERGAPGPKGIRGPGGNTGELGARGPPGDTGFYGPKGQKGMPGIGGTPGTP
GYRGEAGRHGNHGLQGMEGHRGTPGIQGLPGMPGRSVSVGYLLVKHSQTEQKPMCPVGMS
KLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTMPFLYCNPGDVCYYASRNDKSYWLSS
TAPLPMMPVEDGEIRQYISRCSVCEAPSVAIAVHSQDVSIPQCPAGWRSLWIGYSFLMHT
AAGDEGGGQSLSSPGSCLEDFRTTPFIECNGAKGTCHYFATKHSFWLTSVDQSFQTEPDS
ETLKAGQQLSRISRCQVCMKNL
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattgcgattgacgtgttgctgtggcgccccctgctgtccgcttcatgtactgac
tctaactggtctctgtctcttgttcagggccaaacggggcccgttggcccccagggcctg
ggggggcccccagggagggcaggagaggtcggcatcatgggccccaagggggagctgggg
gagcggggccgcggcggggccctgggccccaagggatcggtgggaatgatgggcgttcct
ggattcaccggagctgacgggattcctggccaccccggtacggcgggcccccgagggagg
ccaggggtcgacggctgcaacggaaccaacggggacccggggcggtcggggcgcccgggc
cgcgagggccccccggggtactcaggccagacgggccgcaagggatccaagggggacgag
ctggatctccacgtcttcatggagcgattcaggggcgatagaggttcccccggggctcct
ggaccacacggccaatcaggagggacgggctggccaggctacaggggcctcaccggaccc
aagggcccctgcgggcccccaggaccccccggaccgaagggcaccatgaccaaagtactg
aaaggggtcaagggagagagaggagacgctggcgagcagggacccaccgggaactcaacc
acccgccctcatacagggtccaagattggcagccaggggaggaggggagagaaagggctg
aagggagaagtgggagaagtttcggacaacaagggggaggcaggcgtgacgggcggcccc
ggtggcaggggtgagcacggtctgtacggactgccaggacccaaggggtaccccggggag
gcggggccaatcggccgggacggagtcaaggggaccaggggggaccctggagatgtgatc
tcctctggattctggggcaccggcggaccaacgggccccgcaggagagaccggccacaag
ggggcgcgaggaccggagggagaccaggggccaccaggaccctcggggagaccagccggg
gagtcacagcagctcctctgggacttcttcgggccctttggggacaaaggggactctgga
gataagggccagcccgggaaggcagggatccccgccatcagccccggaccccaggggtac
tccgggctcccgggaccccccggtcccccgggacccaaaggatcatggttggagttcttc
aagggcgccccgggtcagagaggaaggcctgggtctgctggctctaagggagatacaggg
gaccacgggcggtgcgagtgcagcaacgtccactccaaacccgggcccccgggggccgcc
ggcgagcaaggcagcatcggcatgagcggcgagatcggacagcagggcgacgacggcgag
gaaggaccccagggcgccagcggactgcctgggttcccgggccccagcggcctgcagggg
cccaaggggaggaggggctccacgacctcggcgctgcagaaagggtacccgggggatccg
ggtgaggccgggccgtcagggagtccgggggtgcagggggtcccgggtcacctcgggacc
ccagggttccccggggcacgtggctcccagggcgagggcccggttggggagccaggggac
cgggggtactgcggctcccaggggccccagggtgcggccgggctgaggggggacccggga
caggtcctgggggcctccaagggcctccaagggcccccaggggaccagggtctgccgggc
tacgacggggtcgaggggccccgaggatcttcaggcggctgtactcccagggaggacgga
gggcagtatgacgtcacaggagactgcgacgttaccccaggacccccaggcttgccgggg
ttcccgggacccaccgggctggagggcatgccaggcccgccggggcaccatggagccgaa
ggcctcaaaggaggcaggggagacaaaggagaacggggagaacaaggcagaggcggcctc
ccaggaaacaagggtttcgttggccctcgtggagacctgggccagctgggggcgccaggg
gtgaaggggtaccccggggtcaacggcatcccgggccgggacggggggccgggcgcgaag
gggaagcacggggagatctttggggcctccacggggggccccggggaaccaggactcccg
ggcctgcagggggaccagggcccggccggagaacagggcgggtcgggtcaccaagggatg
gggggcatgccagggatcatcgggctgaagggtgcaggcggacctccaggcctgcagggg
gaggaggggaggcccggacccccagggcgctacgacttccccgggccgcccggccggacg
ggaccaccggggccccacggagtagagggagagccaggcctcagcggggagcggggggcc
gagggggacgcgggggccccggggcccgccgggctgaagggcaccccagggggcttcggg
gaggaaggccccaacggagaccagggggccacggggggccagggggtccccgggccggac
ggacgccccgggatctccggggtcaaagggagcaaagggtctcacggcatggagggcttc
aagggccgccccggcgcgcagggggcccccggcttcagcggggtgaagggggagaccggc
ctgcccggccagggaggcctcaagggcgggatggggcgcggcggagagaagggtgaccgg
ggcctgatgggtcctccgggagacaagccccacatcccgcggcagatcatcgccgacatg
aaggggaccaagggagaggacggccacctcggggacccgggcttcaccggggccagaggt
ccaaagggctaccccggtcttccagggtatgaaggacttcacggacatcctggagacccc
agccatgagaaaggtctccatgggaaccggggagcagagggtctactgggccccaaagga
accccggggctcacaggaacccgcgggatcggaggctttgacgggatgaacggaaaccag
gggcagaagggcagtcctggggcctacggtgcctcaggggactacggcaagagtggcttc
aaaggggataaaggccagcgtgtcgaccttccaggctccacggggctgaggggagagctg
ggcttcgctggcccgctgggcgagaaaggactctctggccgtcccggagacagcggcagc
ccgggtttcaacggcatcgaggggaggaccggggagctgggagatccgggaataggggga
gccccaggctccgacggccaggcgggctcccctgggacccagggtcagcggggctggccc
gggacccccggggagggcgggacgcccggtgtgtacggcctcccgggagagaaagggttc
cccggtctgaagggtctctacggactccacgggctgacggggcagaagggtctcaccggg
ctccaagggccggatggatctggaacccccggcaaccctggagccaaagggcagaaggga
gagacgggcgtgcccaacagccagcccggggtccctggtgtggtcggggagacgggcctc
caaggacctccaggggatcaaggccaaccaggacccccagggttccaaggtccacagggc
caggacggggtcccagacggaccgggaccccctgggagcccgggctacccaggacctaaa
ggactgctgggattccccgggcagaggggagttcccggcctggaggctcctcccggggag
aagggggtcgtgggggggttcggagcgccgggacttcccggtgccaaaggactgagagga
gacccggggccggcggggtacagggggtacaacggggagtccgggaggaaaggggtcaaa
ggtgaacaggggctgatggggatacctggccggggtggtaaccaaggaggccgaggacca
accgggcccaaaggatcctctggacccacgggggttcccggtctcccgggcagcccgggc
cccctgccgctccccctcaccatcccggcagagaggggcgctccgggccccaaggggatc
cgcgggccgggcgggaacaccggggagctgggagcacgaggtccccctggggatacaggg
ttctacggcccaaagggacagaagggaatgcccgggatcgggggaacgccgggaacgcct
gggtaccgcggggaggcgggaaggcacggcaaccacggtctgcaaggcatggaaggtcat
cgggggacccccggtatccaggggctgccggggatgccgggccgtagcgtcagcgtgggg
tacctcctggtgaagcacagccagacggagcagaagcccatgtgcccggtgggcatgtcc
aagctgtgggacgggtacagcctgctgtacttcgagggccaggagaaggcccacaaccag
gacctggggctggcgggttcctgtctgccgcgcttcagcaccatgcccttcctgtactgc
aaccccggagacgtgtgctactacgccagccgaaacgacaagtcctattggctctcgtcc
accgcaccccttcccatgatgcccgtggaggacggcgagatccggcagtacatcagccgc
tgctcggtgtgcgaggccccctccgtggccatcgccgtccacagccaggacgtcagcatc
ccgcagtgccccgccggctggaggagcctctggatcggctactccttcctcatgcacacg
gcggctggcgatgaaggcggcggccagtccctctcctcgcccgggtcctgtctggaggac
ttccgcaccacgccgttcatcgagtgcaacggggccaagggcacctgccattactttgca
accaagcacagcttctggctgacctcggtggaccagtccttccagacggagcccgactcg
gagacgctgaaggccggccagcagctcagccgcatcagccgctgccaggtgtgcatgaag
aacctgtga
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