Gadus morhua (Atlantic cod): 115532854
Help
Entry
115532854 CDS
T10832
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04510
Focal adhesion
gmh04512
ECM-receptor interaction
gmh04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
gmh04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115532854 (col4a2)
Glycosaminoglycan binding proteins [BR:
gmh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115532854 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
115532854
NCBI-ProteinID:
XP_030198694
LinkDB
All DBs
Position
20:complement(918181..947335)
Genome browser
AA seq
1642 aa
AA seq
DB search
MQIAIDVLLWRPLLSASCTDSNWSLSLVQGQTGPVGPQGLGGPPGRAGEVGIMGPKGELG
ERGRGGALGPKGSVGMMGVPGFTGADGIPGHPGTAGPRGRPGVDGCNGTNGDPGRSGRPG
REGPPGYSGQTGRKGSKGDELDLHVFMERFRGDRGSPGAPGPHGQSGGTGWPGYRGLTGP
KGPCGPPGPPGPKGTMTKVLKGVKGERGDAGEQGPTGNSTTRPHTGSKIGSQGRRGEKGL
KGEVGEVSDNKGEAGVTGGPGGRGEHGLYGLPGPKGYPGEAGPIGRDGVKGTRGDPGDVI
SSGFWGTGGPTGPAGETGHKGARGPEGDQGPPGPSGRPAGESQQLLWDFFGPFGDKGDSG
DKGQPGKAGIPAISPGPQGYSGLPGPPGPPGPKGSWLEFFKGAPGQRGRPGSAGSKGDTG
DHGRCECSNVHSKPGPPGAAGEQGSIGMSGEIGQQGDDGEEGPQGASGLPGFPGPSGLQG
PKGRRGSTTSALQKGYPGDPGEAGPSGSPGVQGVPGHLGTPGFPGARGSQGEGPVGEPGD
RGYCGSQGPQGAAGLRGDPGQVLGASKGLQGPPGDQGLPGYDGVEGPRGSSGGCTPREDG
GQYDVTGDCDVTPGPPGLPGFPGPTGLEGMPGPPGHHGAEGLKGGRGDKGERGEQGRGGL
PGNKGFVGPRGDLGQLGAPGVKGYPGVNGIPGRDGGPGAKGKHGEIFGASTGGPGEPGLP
GLQGDQGPAGEQGGSGHQGMGGMPGIIGLKGAGGPPGLQGEEGRPGPPGRYDFPGPPGRT
GPPGPHGVEGEPGLSGERGAEGDAGAPGPAGLKGTPGGFGEEGPNGDQGATGGQGVPGPD
GRPGISGVKGSKGSHGMEGFKGRPGAQGAPGFSGVKGETGLPGQGGLKGGMGRGGEKGDR
GLMGPPGDKPHIPRQIIADMKGTKGEDGHLGDPGFTGARGPKGYPGLPGYEGLHGHPGDP
SHEKGLHGNRGAEGLLGPKGTPGLTGTRGIGGFDGMNGNQGQKGSPGAYGASGDYGKSGF
KGDKGQRVDLPGSTGLRGELGFAGPLGEKGLSGRPGDSGSPGFNGIEGRTGELGDPGIGG
APGSDGQAGSPGTQGQRGWPGTPGEGGTPGVYGLPGEKGFPGLKGLYGLHGLTGQKGLTG
LQGPDGSGTPGNPGAKGQKGETGVPNSQPGVPGVVGETGLQGPPGDQGQPGPPGFQGPQG
QDGVPDGPGPPGSPGYPGPKGLLGFPGQRGVPGLEAPPGEKGVVGGFGAPGLPGAKGLRG
DPGPAGYRGYNGESGRKGVKGEQGLMGIPGRGGNQGGRGPTGPKGSSGPTGVPGLPGSPG
PLPLPLTIPAERGAPGPKGIRGPGGNTGELGARGPPGDTGFYGPKGQKGMPGIGGTPGTP
GYRGEAGRHGNHGLQGMEGHRGTPGIQGLPGMPGRSVSVGYLLVKHSQTEQKPMCPVGMS
KLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTMPFLYCNPGDVCYYASRNDKSYWLSS
TAPLPMMPVEDGEIRQYISRCSVCEAPSVAIAVHSQDVSIPQCPAGWRSLWIGYSFLMHT
AAGDEGGGQSLSSPGSCLEDFRTTPFIECNGAKGTCHYFATKHSFWLTSVDQSFQTEPDS
ETLKAGQQLSRISRCQVCMKNL
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattgcgattgacgtgttgctgtggcgccccctgctgtccgcttcatgtactgac
tctaactggtctctgtctcttgttcagggccaaacggggcccgttggcccccagggcctg
ggggggcccccagggagggcaggagaggtcggcatcatgggccccaagggggagctgggg
gagcggggccgcggcggggccctgggccccaagggatcggtgggaatgatgggcgttcct
ggattcaccggagctgacgggattcctggccaccccggtacggcgggcccccgagggagg
ccaggggtcgacggctgcaacggaaccaacggggacccggggcggtcggggcgcccgggc
cgcgagggccccccggggtactcaggccagacgggccgcaagggatccaagggggacgag
ctggatctccacgtcttcatggagcgattcaggggcgatagaggttcccccggggctcct
ggaccacacggccaatcaggagggacgggctggccaggctacaggggcctcaccggaccc
aagggcccctgcgggcccccaggaccccccggaccgaagggcaccatgaccaaagtactg
aaaggggtcaagggagagagaggagacgctggcgagcagggacccaccgggaactcaacc
acccgccctcatacagggtccaagattggcagccaggggaggaggggagagaaagggctg
aagggagaagtgggagaagtttcggacaacaagggggaggcaggcgtgacgggcggcccc
ggtggcaggggtgagcacggtctgtacggactgccaggacccaaggggtaccccggggag
gcggggccaatcggccgggacggagtcaaggggaccaggggggaccctggagatgtgatc
tcctctggattctggggcaccggcggaccaacgggccccgcaggagagaccggccacaag
ggggcgcgaggaccggagggagaccaggggccaccaggaccctcggggagaccagccggg
gagtcacagcagctcctctgggacttcttcgggccctttggggacaaaggggactctgga
gataagggccagcccgggaaggcagggatccccgccatcagccccggaccccaggggtac
tccgggctcccgggaccccccggtcccccgggacccaaaggatcatggttggagttcttc
aagggcgccccgggtcagagaggaaggcctgggtctgctggctctaagggagatacaggg
gaccacgggcggtgcgagtgcagcaacgtccactccaaacccgggcccccgggggccgcc
ggcgagcaaggcagcatcggcatgagcggcgagatcggacagcagggcgacgacggcgag
gaaggaccccagggcgccagcggactgcctgggttcccgggccccagcggcctgcagggg
cccaaggggaggaggggctccacgacctcggcgctgcagaaagggtacccgggggatccg
ggtgaggccgggccgtcagggagtccgggggtgcagggggtcccgggtcacctcgggacc
ccagggttccccggggcacgtggctcccagggcgagggcccggttggggagccaggggac
cgggggtactgcggctcccaggggccccagggtgcggccgggctgaggggggacccggga
caggtcctgggggcctccaagggcctccaagggcccccaggggaccagggtctgccgggc
tacgacggggtcgaggggccccgaggatcttcaggcggctgtactcccagggaggacgga
gggcagtatgacgtcacaggagactgcgacgttaccccaggacccccaggcttgccgggg
ttcccgggacccaccgggctggagggcatgccaggcccgccggggcaccatggagccgaa
ggcctcaaaggaggcaggggagacaaaggagaacggggagaacaaggcagaggcggcctc
ccaggaaacaagggtttcgttggccctcgtggagacctgggccagctgggggcgccaggg
gtgaaggggtaccccggggtcaacggcatcccgggccgggacggggggccgggcgcgaag
gggaagcacggggagatctttggggcctccacggggggccccggggaaccaggactcccg
ggcctgcagggggaccagggcccggccggagaacagggcgggtcgggtcaccaagggatg
gggggcatgccagggatcatcgggctgaagggtgcaggcggacctccaggcctgcagggg
gaggaggggaggcccggacccccagggcgctacgacttccccgggccgcccggccggacg
ggaccaccggggccccacggagtagagggagagccaggcctcagcggggagcggggggcc
gagggggacgcgggggccccggggcccgccgggctgaagggcaccccagggggcttcggg
gaggaaggccccaacggagaccagggggccacggggggccagggggtccccgggccggac
ggacgccccgggatctccggggtcaaagggagcaaagggtctcacggcatggagggcttc
aagggccgccccggcgcgcagggggcccccggcttcagcggggtgaagggggagaccggc
ctgcccggccagggaggcctcaagggcgggatggggcgcggcggagagaagggtgaccgg
ggcctgatgggtcctccgggagacaagccccacatcccgcggcagatcatcgccgacatg
aaggggaccaagggagaggacggccacctcggggacccgggcttcaccggggccagaggt
ccaaagggctaccccggtcttccagggtatgaaggacttcacggacatcctggagacccc
agccatgagaaaggtctccatgggaaccggggagcagagggtctactgggccccaaagga
accccggggctcacaggaacccgcgggatcggaggctttgacgggatgaacggaaaccag
gggcagaagggcagtcctggggcctacggtgcctcaggggactacggcaagagtggcttc
aaaggggataaaggccagcgtgtcgaccttccaggctccacggggctgaggggagagctg
ggcttcgctggcccgctgggcgagaaaggactctctggccgtcccggagacagcggcagc
ccgggtttcaacggcatcgaggggaggaccggggagctgggagatccgggaataggggga
gccccaggctccgacggccaggcgggctcccctgggacccagggtcagcggggctggccc
gggacccccggggagggcgggacgcccggtgtgtacggcctcccgggagagaaagggttc
cccggtctgaagggtctctacggactccacgggctgacggggcagaagggtctcaccggg
ctccaagggccggatggatctggaacccccggcaaccctggagccaaagggcagaaggga
gagacgggcgtgcccaacagccagcccggggtccctggtgtggtcggggagacgggcctc
caaggacctccaggggatcaaggccaaccaggacccccagggttccaaggtccacagggc
caggacggggtcccagacggaccgggaccccctgggagcccgggctacccaggacctaaa
ggactgctgggattccccgggcagaggggagttcccggcctggaggctcctcccggggag
aagggggtcgtgggggggttcggagcgccgggacttcccggtgccaaaggactgagagga
gacccggggccggcggggtacagggggtacaacggggagtccgggaggaaaggggtcaaa
ggtgaacaggggctgatggggatacctggccggggtggtaaccaaggaggccgaggacca
accgggcccaaaggatcctctggacccacgggggttcccggtctcccgggcagcccgggc
cccctgccgctccccctcaccatcccggcagagaggggcgctccgggccccaaggggatc
cgcgggccgggcgggaacaccggggagctgggagcacgaggtccccctggggatacaggg
ttctacggcccaaagggacagaagggaatgcccgggatcgggggaacgccgggaacgcct
gggtaccgcggggaggcgggaaggcacggcaaccacggtctgcaaggcatggaaggtcat
cgggggacccccggtatccaggggctgccggggatgccgggccgtagcgtcagcgtgggg
tacctcctggtgaagcacagccagacggagcagaagcccatgtgcccggtgggcatgtcc
aagctgtgggacgggtacagcctgctgtacttcgagggccaggagaaggcccacaaccag
gacctggggctggcgggttcctgtctgccgcgcttcagcaccatgcccttcctgtactgc
aaccccggagacgtgtgctactacgccagccgaaacgacaagtcctattggctctcgtcc
accgcaccccttcccatgatgcccgtggaggacggcgagatccggcagtacatcagccgc
tgctcggtgtgcgaggccccctccgtggccatcgccgtccacagccaggacgtcagcatc
ccgcagtgccccgccggctggaggagcctctggatcggctactccttcctcatgcacacg
gcggctggcgatgaaggcggcggccagtccctctcctcgcccgggtcctgtctggaggac
ttccgcaccacgccgttcatcgagtgcaacggggccaagggcacctgccattactttgca
accaagcacagcttctggctgacctcggtggaccagtccttccagacggagcccgactcg
gagacgctgaaggccggccagcagctcagccgcatcagccgctgccaggtgtgcatgaag
aacctgtga
DBGET
integrated database retrieval system
