KEGG   Gadus morhua (Atlantic cod): 115532914
Entry
115532914         CDS       T10832                                 
Symbol
rif1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
  KO
K11138  telomere-associated protein RIF1
Organism
gmh  Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gmh03032]
    115532914 (rif1)
DNA replication proteins [BR:gmh03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    115532914 (rif1)
SSDB
Motif
Pfam: Rif1_N HEAT_ULK4
Other DBs
NCBI-GeneID: 115532914
NCBI-ProteinID: XP_030198854
LinkDB
Position
20:5713317..5738909
AA seq 2849 aa
MMATAAPESGSSLLPLLESLEDSTAGQPEQTDVYLTIASRLSGEEGRQFLPAVEKHFSRL
GKAILTHITGPNPELSQAALQALGFCVYHAHVVSGVSENFASEILSALCSLVVSSTDKNS
CTRALWVISKQSFPSEVVAKKVDPLLEMLERVMSRRDIQSLVMEHEALNVVIRLLEQAPV
QMGVAAVRWSKLVIPMVVHSASKVRLRAAAAMELGLPLLLERQNEVAAVIEPLMPTILVP
ELQKLFASKNEVNVLKLWPLFVKLLGKHLHRGGPFINSLLHLEELGFRSSSPNVKKIAFI
AWKSLIDNFALNPEILCSAKRMKLLLQPLLSIHVRTEALQLSRLEVWWYLVVRLGPNLGP
HFEQVSIPLLQCTIRADSSTSTLQAGTPVRGAGQNSTLGSSTPKTGNPTCFNSPANTPRL
NLSLSQQAGQSFPPIQLLGLEMLLHYFLGPEVVPAAARVNLQLTLEPLTHSFLSGGSTFS
KHAALLISSVTHGFISVGADAPDPLLVLIWRSLVSLVSSTVDSGSSSKKERQGSEVLTLM
LQALQTIAASEALPPSRVLVLLEITVKAIHPRVLGSAAYQVGKMDVLNGTPALFLILLLY
NSDKLSTYAEDERFFQCLNTLVGCGLAGPTSSLAFVEAVLGAAARRASFVPSKEHLWRMW
SAVVTPLTDAITQSNEVNQGDALEHDFSAVHSSLMFPVRHLLLVDPLPQMTQKSLLSTWS
KLYRVFARCSALVLTAEENVSCEELCVRMAAFLNVDTLARPATLDAVSGMLQVMVECVDF
SPYTPTFQQKTKSPCTPVNWTRKRSQALGNLAAFQALLIQALEAFLVAAGPSDSTGLALA
SVLSTLFNSLAQATPLRVALGSLAPHLAVLYRRAAATTTTSETPAFSSQLVTKLEKLLVE
LLGHLQSRSTLDYDDQLLLYLAPLLCVAFPHKNKALRTQATHFWNATFAKASSLAYPEEL
KPVLSQVKRKTPIILPGFEAVAVSDEHSGPYSSDCSQLDTKLSGVQMPSAGKRDSLLGRA
AELKDQSAKSLAKPVSTKLDFGSPKPPPRGVLEEEASIDFVFIPPENKERVLTEHQKEVK
RTKRGDLPAMYNNLDASLDTTAFTQYTQSQEDSTEKLIAEQPKSAESPVKVDEMEVEGES
DLLYKDTEDYTSPGAAKNKDPAVVEQEGGVIPDSADVSMQDAQENPEPNEGASADVSGGS
DLVSGTPPKPNSRRQSFITLEKYVEGQAASPIQVTKFTGRLTRPAKDKASPAQADISSPS
RDEPMASEISSPSRDEPKLSEIYSPSRDDPTLSETSSPSGVEPLVSETSAPSGVEPMVSE
TSSPSGDEPKLSETLRPTESSSPPDSTDSDQTSSELEENPAKRHSSGGTEDEDDVIPDTQ
ATSWDESATGRTKEESDGGAAPEEQESNGTNQETVESDGSQEDANNSQSISADASRRSGR
IRVRPRLPGQCSEDEEEEEKQKKKKKKKDKNSLDYKGRTGSVTANKADDLSPQSRSGRRG
RLATSEVNQSEESLRKSPRIDKKKFSQSDLPARGSRKTALYSQSSYLLGSEEEKPRRRSA
RGGEHSQTDSQPETNTDSDSQSQARRSLRKKAAATETEKPATAKQQAKGSAAEKPPVHPR
LSAPKKHEPPPPTGSPAPPHSQNESQSQKMPDAKTTVISNSEEFEPERHAGKVEAMASLS
APVTPSPVKPAPQAPAPENPASQVPASQVPASQVPASQVPASQVPASEAAAPDEAASEAA
APDEAAPDEAAPEAAAPDEAAPEAAAPDEAAPEAAAPDEAAPEAAAPDEAAPEAAAPDEA
APEAAAPDEAAPDEAAPDEAAPDEAAPDEAAPDEAAPDEASAEAPAAPETSTYKVVTPET
IVSEEATPETSAPETSAPETAAPETAAPETAAPETAAPETAAPETAAPETAAPETTAPKD
GTPEATSEAPAAPEEATTVAPAASQAPAAPETAALPSQTDRQPKPRRSELSLLIEGLSGS
STDEDKRRAGAANSISQEDSQALTLSSSGSQLQNRLRRRGKASAQSLEAAEKSQNLTESE
LDAEAQASPSAVRTRTRSSFPHGEQVSQTIFSSLDKAALAARKPNSGRGKYPRRRSSQAL
LANNENSESESSETRESPPSKKKISYHKAPLVPSPLTVQSAAMDDASETSQSDPSQGTPT
ISPSKTKSLLQSQKEALISLSRVPLVFTELEQQCEVGVIPIVALEQVPEKAGTENTNPIA
PNTDLKCKLSLIAPSEEDCEQRLSQAKLDPSDQVPLDCESTDTITERSQEVLLPPVSAAP
TSATNASSNEDEDDGDDEVFTDATDLSSAPADHRSTPAASGEATANQSSSASGSSEEKVQ
HVAQPAQEEVIAEVPQANSSEPSGVPADGKGCEDAASTPAKQDEGAPQKALDILVVEQEV
GQISSREDPAGLAEATTSVQDEVRAAQAILCPQVAEEEPTTSSLWNSTHAAKEDNHSSPA
KRLTPEVGLGLEVAQSPSGRTRGTWSPSASPSSSILKKAQKRALEEDAAISPLVKSRRVS
FANPIQHQELADDIDRRSPVVRTSSPKRFKSNSAIPQSKYVTTPTKGLLVLSPRNLHSSG
YKSSKKCLMSEMSQEPRAIPKDCVFPSLVCCSAPIEAVLPLISTNMWPRGFGQLVRAKNI
RTVGDLSSLKPLDIKTLPIRSPKITNVKKALQLYEAQRKMRGFGDELKSFEEMEKMMSSS
EPEETNTSLNQEEDGKTPHETLATELVDEDQPADQESVLAETSTHDVETATNKMEAKKEP
VEAMEELEESKVVEVEEARRSVPQSPIRHLSPGGLLCQADTLSSSASIEELGLCTAEQLV
RLHDALGGVMRSVVLELQSRLGHMDGTRR
NT seq 8550 nt   +upstreamnt  +downstreamnt
atgatggccacggcagcgccagaaagcggctccagcctcttgcccttactggagtcccta
gaggacagcaccgcgggacagccagagcaaaccgatgtctacctcaccatagccagccgt
ctcagcggagaggaaggaaggcagtttctccctgcagtcgagaagcacttttcccgcctg
ggcaaggccatcttgacccacatcactgggcctaaccctgagctcagccaggcagccttg
caagccctgggcttctgtgtgtaccacgcacatgttgtctcgggggtttctgaaaacttt
gcttcagagatattatcagcgctttgttccctggttgtgtcctcgacggataaaaactcg
tgcacccgggcattatgggtaatctccaagcagagctttccctccgaggtcgtggccaag
aaagtggaccccctcctggagatgctcgagcgtgtgatgagccgacgggacatccagtcg
ctggtgatggagcacgaagccttgaatgtggtgatcaggttgctggagcaggccccggtc
cagatgggcgtggcggcggtgcgttggtccaagctggtcatccccatggtggtccactcg
gcctccaaggtgcgtctccgggcggcggcggccatggagctgggcctgccgctgctgctg
gagcggcagaacgaggtggccgccgtcatcgagcctctgatgcccacgatactcgtaccg
gagctacagaaactatttgcgtcgaagaacgaagtgaacgtgctcaaactctggcctcta
ttcgtcaaactcctgggaaagcacctccatcgaggaggccccttcatcaactccctgctg
cacctggaggagctgggcttccgcagctcctcgcccaacgtcaagaagatcgccttcatc
gcctggaagagcctcatcgacaacttcgccctcaaccccgagatcctgtgcagtgccaag
cgcatgaagctcctcctgcagccgctgctctccatccacgtgcgcacggaggccctgcag
ctcagccggctggaggtgtggtggtacctggtggtgcgactgggccccaacctgggcccc
cactttgagcaggtgtccattcccttactccagtgcaccatacgggcagactcctccacc
tccaccctccaggctgggaccccagtgagaggcgcggggcagaacagcaccctgggctcc
tccactccaaagaccggcaatcccacgtgcttcaacagcccggccaacactccccgcttg
aacctcagcctgagccagcaggccggccaaagcttcccccccatccagctgctgggcctg
gagatgctgctgcactatttcctggggccggaggttgttcccgctgcagcgagggtcaac
ctgcagctgacactggagccgctgacgcactccttcctgtcggggggctcgaccttctcc
aagcacgccgccctgcttatctccagcgtgacgcacggattcattagcgtcggagcagac
gccccagatcccctcctggtcctcatctggaggagcctggtcagtttggtcagctccaca
gtagactcggggagcagcagtaagaaggagcggcagggctcggaggtgctgacgctgatg
ctgcaggcgctgcagaccatcgccgcctccgaggcactcccccccagcagagtcctggtc
ctcttggagatcacggtgaaagccatacaccccagggtgctgggctccgcggcctaccaa
gtggggaagatggacgtgctcaatggtaccccagcactcttcctcatcctcctcctctac
aacagcgacaagctgtcgacctacgcagaagacgagaggttcttccagtgtctgaacacg
ctggtgggctgtgggctggcggggcccacgtcgtccctggcgttcgtcgaggcggtgctg
ggggccgcggcccgcagggcctccttcgtgcccagcaaggagcatctgtggcggatgtgg
agcgccgtggtgacgcccctcacggacgccatcacccagtccaacgaggtgaaccaaggc
gacgctctggagcacgacttcagcgcggtccactcctccctcatgttccccgtcagacac
ctcctgctggtcgaccctctcccccagatgacccagaagtccttgctgtcgacgtggtcc
aagctgtaccgggtgttcgcccgctgctcggcactggtgctcacggcggaggagaacgtg
tcctgcgaggagctgtgcgtcaggatggccgccttcctcaacgtagacacgctggctcgc
cctgccaccttggacgccgtctccggtatgctgcaggtcatggtggagtgtgtggacttc
tctccgtacacgcccacgtttcagcagaagaccaagtccccctgcacacccgtcaactgg
acccgcaagaggagccaggccctggggaacctcgccgccttccaggccctcctgatccag
gccctggaggcctttctggtcgccgcgggcccctcggattccaccgggctggcgctggcc
tccgtcctgtccacgctcttcaacagcctggctcaggccacgcccctccgggtggcgctg
ggctccctggctccgcacctcgccgtcctctacagacgggccgctgccaccaccaccacc
agcgagacccccgccttctcctcccagctggtgacgaagctggagaagctcctggtggag
ctgctgggccaccttcagagccgctccacgctggactacgacgaccagcttctgctctac
ctcgcccccctgctctgcgtcgcctttccgcacaagaacaaggccctgcgcacgcaggct
acgcacttctggaacgccaccttcgccaaggcgtccagcctcgcctaccctgaggagctg
aagccggtcctgagccaggtgaagaggaagacccccatcatcctgccgggctttgaggcc
gtcgcggtgtctgacgagcacagcggaccgtattcgagcgactgttcgcagttggacacc
aagctgagcggcgtgcagatgccgtctgcggggaagagggactccttgctgggcagggct
gcggagctgaaggaccagagcgccaagtccctcgccaaacccgtctctaccaagctggac
ttcggctctcccaagcccccccccaggggggtgctggaggaggaagcctccatcgacttt
gtgttcattccccctgagaacaaggagcgtgtgttgacggagcaccagaaggaggtcaag
aggaccaaaaggggggacctccctgccatgtacaacaacctggacgcttccctggacacc
acggccttcacccagtacacccagagccaagaggattccacagagaagttaattgcggaa
caacccaaaagtgcagagtcccctgtcaaggttgatgaaatggaagtcgagggagaatct
gaccttctatacaaggacactgaggactacaccagtccgggcgccgcaaaaaacaaggac
cctgcagtggtcgagcaggaggggggggtgatcccggactcggccgacgtgtccatgcag
gacgcccaagaaaacccggagcccaacgagggcgccagcgctgacgtctccggcggctcg
gacttggtctctggcacccctccgaagcccaacagcaggaggcagtccttcatcaccctg
gagaaatatgtggaaggccaggccgccagccccatccaggtgaccaagttcacggggcgc
ctcacacgccccgccaaagacaaagcgagccccgcccaggcggatatctcctcaccgagc
agggatgagccgatggcgtccgagatctcctcaccgagcagggatgagccaaagctgtcg
gagatctactcaccgagcagggacgatccgacgctgtcggagacatcctcaccgagcggg
gttgagccgttggtgtcggagacatctgcaccgagcggggttgagccgatggtgtcggag
acatcctcaccgagcggggatgagcccaagctgtcggagacactccggcccacagagtct
agctcgccaccggacagcactgactcggaccaaacgagcagcgagctggaggaaaaccct
gccaagaggcattccagtggcggaacagaagacgaggacgatgttatccctgacacacag
gctacttcctgggatgagagcgcaaccggaaggactaaggaagaatcggatggtggtgca
gctccagaggagcaggaatcgaatggaaccaatcaagagactgtagagtctgatggatct
caggaagatgctaacaattcccaatccatctctgcagatgcatccaggcggtctgggcgc
atcagggtgcggcctcggttgccaggacaatgctcagaggatgaggaggaggaggagaag
cagaagaagaagaagaagaagaaggataaaaactccctggattacaagggcaggactggt
tctgtcaccgcaaataaggcggatgacctgtcgccacaaagcaggtctggcaggcggggg
agactggccacatccgaggtaaaccaaagcgaagaaagtctgaggaagagtcctcggatt
gacaagaaaaagttttcgcaatccgatttaccggccaggggttcccgtaagacggcgttg
tacagccagtcatcatatctgctcggctcggaggaggagaagccccggaggagaagtgcc
agaggaggcgaacacagccaaacggactctcagccagaaacgaacactgattcagacagc
cagtcccaggcaaggcggagtctacggaagaaggcagctgccacagagactgaaaagcct
gcgacggccaagcagcaggctaaaggctcggcggcggagaaaccacccgtacaccctagg
cttagtgctcccaaaaaacacgagccgccaccaccaacgggctctccagcgcccccacac
tctcagaatgaaagccagtcccagaaaatgccagacgcaaagactacggttatcagtaac
tctgaggagtttgagcctgagagacatgctgggaaggttgaggccatggcctccctgagc
gcccccgtgacgccttcacccgtgaagcctgcaccccaggcgcctgcacccgagaatcct
gcatctcaagtgcctgcatctcaagtgcctgcatctcaagtgcctgcatctcaagtgcct
gcatctcaagtgcctgcatccgaggcggctgcacccgacgaggctgcatccgaggcggct
gcacccgacgaggctgcacccgacgaggctgcacccgaggcggctgcacccgacgaggct
gcacccgaggcggctgcacccgacgaggctgcacccgaggcggctgcacccgacgaggct
gcacccgaggcggctgcacccgacgaggctgcacccgaggcggctgcacccgacgaggct
gcacccgaggcggctgcacccgacgaggctgcacccgacgaggctgcacccgacgaggct
gcacccgacgaggctgcacccgacgaggctgcacccgacgaggctgcacccgacgaggct
tcagctgaggcgcctgctgcacccgagacttctacatacaaggtagttacacctgaaact
attgtatccgaggaggctacacccgagacttctgcacccgagacttctgcacccgagact
gctgcacccgagactgctgcacccgagactgctgcacccgagactgctgcacccgagact
gctgcacccgagactgctgcacccgagactgctgcacccgagactactgcacccaaggac
ggcacacctgaggctacatctgaggcacccgctgcacccgaggaggctacaaccgtggcg
cctgctgcatcccaggcgcctgctgcgcccgagactgctgcactgccctcccagactgac
cgccagcccaaaccacgtcgcagtgaacttagcttgttaatagagggcttgagtgggtca
tcgactgatgaggacaagagaagggccggtgcagccaactcaatcagccaggaagactct
caagcgctcactctgtcttcctccggcagccagctgcagaacagactcaggcgaaggggc
aaggcctccgcacagtcacttgaggctgctgagaaaagccaaaatttaaccgaaagcgaa
ctggatgccgaggctcaggcgtccccttctgctgtcagaaccaggaccagaagcagcttt
ccgcatggggagcaggtttcccaaaccatcttctcctccctggataaggctgccttggca
gcccgtaaaccaaactcaggccggggcaaatatccaagacggaggtcatcccaagccctc
ctggccaacaatgagaactcggagtcagaatcctccgagactagagagtctcctccctcg
aaaaagaaaatcagctatcataaggctcctctggtgccaagccctttaactgtacagagc
gcagccatggacgatgcctctgaaacctctcaaagtgatccctcacagggcacacccaca
ataagcccctcgaaaacaaaatctctgttgcaatcgcagaaggaggcattaatctcactt
tcaagggtgccattggttttcacggaactcgagcagcaatgtgaggtgggggttatcccg
attgtagccctggagcaagtcccagagaaagcgggaaccgagaacacaaatcccattgct
cccaacacagacttgaagtgcaagttgtcactaatagctccatctgaagaagactgcgag
cagaggctttctcaagcaaagctggacccctcggaccaggttcctctggactgcgagtcc
actgatacaataacggaacgttctcaggaggttcttctaccccctgtttccgctgcgccc
acctcggccacaaacgccagctcgaatgaagacgaggatgacggtgacgacgaggtgttc
accgacgctacagatctgtcgtctgctcctgcagaccatcgttccacgccggcggcgtcc
ggcgaggccactgcgaaccagagctcatcggcctctggctcctcagaggagaaggttcaa
catgtggctcaaccggcgcaagaggaggtcattgcggaagtaccacaggcgaactcttcg
gaaccatccggagtaccggcagacggcaaaggttgcgaggacgccgcttccaccccggct
aaacaggacgagggcgcacctcaaaaggccctagatatacttgtagttgaacaggaggtg
ggccagatcagctcacgggaagacccagcggggttggctgaagccacgacgagtgtccag
gatgaagtcagggcagcacaagctattctatgtcctcaagtagcggaggaggaaccaacc
acatcctccctgtggaactcgacgcacgccgccaaagaggacaatcactcttctcctgca
aagcgcttgacccccgaggttgggttgggactggaggtcgctcagagccccagtggcagg
accagggggacctggtcgccctcggcctccccgtcctccagtatcctcaagaaggcccag
aagagggcgctggaagaggacgccgccatctcgcctctggttaagtccaggcgcgtgtca
ttcgccaaccccatccagcaccaggaactggccgacgacatcgaccgacgcagtcccgtc
gtcaggaccagctcgcccaaacggttcaaatccaacagcgccatcccgcagtctaagtac
gtcaccacgccaaccaagggactgctggtccttagtccgaggaacctccatagctccggg
tacaagagctccaagaaatgtctgatgtctgagatgagccaggagcctagggccattccc
aaggactgtgtcttcccttcactggtttgctgctctgcacccatagaggctgtgcttcct
ctgatttccaccaacatgtggccccgtgggtttggtcagctggtgagggctaagaacatc
cggacggtgggggacctgagttcactcaaacccctcgacatcaagactctgcccattcgc
tcgccgaagatcaccaacgtcaagaaggctcttcagctttatgaggcacagcgcaagatg
cgaggatttggggatgagttgaagagcttcgaggagatggagaagatgatgtcctcctct
gaaccggaggagaccaacacttcactcaaccaggaggaggatggcaagacccctcacgag
accctcgccacagagttggtggacgaagaccagcctgcggaccaagagagcgtccttgcg
gagacgtcgacccacgacgtggagacggcaaccaacaagatggaggcaaagaaggagcct
gtggaggccatggaggagctggaagagtcgaaggtagtggaggtggaggaggcccgtcgg
agcgtgccgcagtcccccatcaggcacctctcccccggggggcttctctgccaggcggac
accctgagctccagcgccagcattgaggagctgggtctctgcacggcggagcagctggtg
aggctgcacgacgccctgggcggcgtgatgcgcagcgtggtgctggagctccagagccgc
ctgggtcacatggacggcacgcgccgatag

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