Gadus morhua (Atlantic cod): 115532980
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Entry
115532980 CDS
T10832
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3-like isoform X1
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
115532980
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
gmh02000
]
115532980
Transporters [BR:
gmh02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
115532980
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
115532980
NCBI-ProteinID:
XP_030198976
Ensembl:
ENSGMOG00000008386
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Position
2:complement(25509830..25525629)
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AA seq
589 aa
AA seq
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MDAQARVYSGYGREHSWSGQHLEIPLSVLQERWRSQRRLCTPMLSTVFLCRKYFGVFLLP
YCVLALLSGVPLFLMENALGQFTQEGTITCWKKLCPLVEGVGYAIIVIQVFATIYLVILA
YSLFYLLSSFASVLPWTTCSNDWNTDACVELTAPNMTSQHYAELGGNWTSKAPISSAVME
FWERRVLSMSGGIEELGAVQWELCACLLACWLACYFCIWKGVKSTGKVVYVTAVFPYVML
AILLVRGLTLPGAWQGVVYYLRPDFTRLTHLQVWIEAGGQVFYSYGVAAGTINTLGSYNK
KNNNCYKDSLWLCALNSATSFVAGFAVFSILGFMAHQQGVTMDNVVESGPGLAFIAFPQA
VAMMPVPQLWAVCFFIMLIMLGLDSLFGGLETIASSVIDLFPGQMRQPWRREMFLAVFCL
VSFLLQILLVTEGGIYVFQLLDYYGCNGACLLCVALAECVAVGWAFGADRMCDAIKDMSG
QRPCLLFKFCWRYITPLLCLASFIHYAVQNEPLTSNRGHQFPGWSYGLGWVMAFSSVLMM
PVWAILNICRTKGSLRERLCILCRPVEGATGITPQDYSAGLPFQTEMKS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggacgcacaagcgcgagtttattctggctatggccgggaacatagttggtctgggcaa
catctggagattcccctatctgtgctacaagaacggtggagatcacagcggcgtctgtgt
acaccgatgttatcaactgttttcctttgcagaaagtactttggtgtgttcttgctgcct
tactgtgtgttagctcttctgtctggtgttccccttttcttgatggagaacgcgctgggc
cagttcacccaggagggaaccatcacctgctggaagaagctatgtccgctggtagagggt
gttggctatgccattattgtgatccaggtttttgcaacaatatatctggttatattggcc
tattcgctcttctacctgctctcctcctttgcctccgtgctgccatggaccacttgcagc
aacgactggaacacagacgcttgtgtggagctgactgctccgaacatgaccagccaacac
tacgctgaattgggtggcaactggacatctaaagcgccgatcagttctgcagtgatggag
ttctgggagaggcgtgtgctctccatgtccggggggatcgaggagttgggggccgtccaa
tgggagctgtgcgcctgtctcctggcctgctggttggcctgctacttctgcatatggaag
ggagtcaagtccactggaaaggttgtgtatgtcacggcggtgttcccctacgtgatgctg
gccatcctgctggtccggggcttgactctacccggagcttggcagggggtggtctactac
ctgaggccagacttcacccgcctcacacacctgcaggtgtggatcgaggctggaggccag
gtgttctactcctacggtgtggctgcaggcaccatcaacaccctggggagctacaacaag
aagaataacaactgttacaaggacagtctttggctctgtgctctgaacagcgccaccagt
ttcgttgctgggtttgccgtcttctctatcctgggattcatggcacatcaacagggtgtc
accatggacaatgtggtggaatctggccctggtttagcgttcatagcgtttccccaagct
gtggctatgatgcctgttcctcagttgtgggcggtctgcttcttcatcatgctcatcatg
ctgggcctggactcactgtttggtgggctggagaccattgcgtccagcgtcattgacctg
ttccccgggcagatgaggcagccgtggcgcagggaaatgttcctcgccgttttctgtctc
gtctccttcctcctgcagatcttgctcgtcacagagggaggaatctatgtgttccagctt
ctggactactatggctgcaacggagcatgtctgctctgcgtggccctggctgagtgtgtc
gctgttggctgggccttcggcgctgacagaatgtgtgacgccatcaaagacatgagtgga
cagaggccttgccttctcttcaaattctgctggcgctacatcacccccctgctctgcctg
gctagcttcattcactatgctgtgcagaacgaaccgctgacgtcgaaccggggccaccag
ttccccggctggtcctatggtctgggatgggtcatggctttttcctcggtcctcatgatg
cctgtttgggcgatactgaatatatgtcgcacaaagggtagcctgcgcgagcgcctgtgt
atcctctgtcggcctgtagagggcgccacaggcatcacaccgcaggattattcagcaggc
cttccattccaaaccgagatgaagtcataa
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