Gadus morhua (Atlantic cod): 115532997
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Entry
115532997 CDS
T10832
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04622
RIG-I-like receptor signaling pathway
gmh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115532997 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115532997 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gmh04054
]
115532997 (ifih1)
Enzymes [BR:
gmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115532997 (ifih1)
Pattern recognition receptors [BR:
gmh04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
115532997 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
Helicase_C
ResIII
CARD
SWI2_SNF2
C1_4
Motif
Other DBs
NCBI-GeneID:
115532997
NCBI-ProteinID:
XP_030199004
Ensembl:
ENSGMOG00000014790
LinkDB
All DBs
Position
20:554418..577288
Genome browser
AA seq
987 aa
AA seq
DB search
MDSNDKRSVALIENCRARLQTLIRVEPVLDLMHSIDKKQKELIMSKARAEGERQAAHLLI
DTVIRMPRAPGWFQEFLDALSAAGCRHAADYMDVLEAENDNHIRLIELLSASLLDMKTCE
VSTHCLSSGILTAEDVEKVNAETNNHGNKCGARELLRRIIRNPHGWFSDFLEALRVTEHL
LLYKELSGWTMDDKVPGSVPREAGPATEGSPGVGQELQVPSTESCVDLYNDDSSETSSRQ
EDCDLSLNLSDSVGGGADEGGADGGADGGADGGADGGGADGGADGGADGGGVISLRPYQA
EVAAPALEGLNVIICLPTGSGKTRVAVYITGQHLDARLALGQPGKVVVLVNKIPLVEQHY
SSEFAPFLRRYKVGRVSGNSQLKISFPDIVRNHDVIICTAQILENHLAGSENLDDERLEL
SDLTLIVIDECHHTQKGGVYNNIMMRYLKQKYRNLQLSKQGKEPQAVPQVLGLTASPGVG
GATKSTKAEEHILKICANLDACKIMTSSSEDTKDLSKKVSIVEERKKDPFGDLIKAIMTA
IHLHADLHSTCDFGTQTYEQWVVQREYNAAKEEDQKVRVCAEHLRRYNEGLQLSNVIRMC
DALEVLGAFQEEEMRRKEAPEEETPIQVTDTERFLFKLFQDRRAELQRLVTMPEYENSSL
STLRVEVLKEFTNRADARGIIFTKTRRSAMALTQWVQGNAKFAEVGVSANYVLGGGDQSS
VKPMTSAEQKDVLNKFRHGEVNLLIATTVAEEGLDIPECNFVIRYGLVTNEISMIQAQGR
ARAENSSYTLVDVHGSGVVEKELVNEFRQKMMNKAIVKIGNMDQEEFKKKITTYQLEAIQ
ERKMLLNKKKKKKQNDSPSEVSFSCRGCNKDVCRGEDIEVVSQMHHVVVSTEFRSLYNKK
DNTNLQERLVEYETNQFVACNTCGQRWGSMMLYRAIELPSLHVKNLVVTCKGKKISKCAK
WKELDVCFPAFDLSAHASLVDEALDSD
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggactccaatgataaacgctccgtagctctcattgaaaactgccgagccagattgcaa
accctgatcagagtcgagccggtcctggatctcatgcactccatcgataaaaaacagaag
gagctgatcatgagcaaagcccgggcggagggggaacggcaggcggcccacctcctgatc
gacacggtgatccggatgccgcgggcccccggatggttccaggagttcttggacgccttg
tccgccgcgggctgccgacacgcggcggactacatggacgtcttggaggcagagaatgat
aaccacatccggctgatcgagctgctctccgcgagcctcctggacatgaagacctgcgag
gtttctacccactgcctctcatcggggatcctcacagcggaggacgttgaaaaggtaaac
gctgaaacaaataaccatggaaacaaatgcggagctcgagaactactgagaagaatcatc
agaaatcctcacggttggttctcggacttcctcgaagccctgcgtgtcacggaacaccta
ctcctgtacaaagaactgtccggttggaccatggacgacaaagttccaggctctgttcct
agagaggcggggccagccacagagggctcgcctggggttggccaggagcttcaggttccc
agcacggagagctgtgtagacctgtacaacgacgacagcagtgagaccagttcgaggcag
gaggactgtgacctttcgctcaacctctcagacagtgtgggcggaggagctgacgaagga
ggggctgacggaggggctgacggaggagctgatggaggagctgatggaggaggggctgac
ggaggagctgacggaggggctgacggaggaggggtgatctccctgcggccctaccaggcg
gaggtcgcggcccccgccctggaggggctcaacgtgatcatctgcctgcccaccggcagc
gggaagacgcgcgtggcggtgtacatcacagggcagcacctggacgcccggctggcgctg
ggccagcccgggaaggtggtggtgctggtgaacaagatccctctggtggagcagcactac
tccagtgagttcgctccgttcctccggcgctacaaggttggccgggtcagcggcaactcg
cagctcaagatctccttccccgacatcgtgaggaaccacgacgtcatcatctgcaccgcc
cagatcctggagaaccacctggcgggctcggagaacctggacgacgagcgcctggagctc
agtgacctgacgctgatcgtgatagacgagtgtcaccacacccagaagggcggggtctac
aacaacatcatgatgcgctacctgaagcagaagtaccgcaacctgcagctcagcaagcag
ggcaaggagccgcaggccgtgccccaggtcctgggcctcactgcctccccaggcgtcggg
ggcgccaccaagagcaccaaggctgaggagcacatcctcaaaatttgtgctaatttggac
gcttgcaaaatcatgacgtcgagcagcgaagacacgaaggacctgtccaagaaggtctcc
atcgtggaagagagaaaaaaggaccctttcggtgacctcatcaaggccatcatgacggcc
atccacctgcacgctgacctccactccacctgtgacttcggcacacagacctacgagcag
tgggtggtgcagagagagtacaacgcggccaaagaggaggaccagaaggtgagggtctgc
gctgagcacctgcggcgctacaacgaaggcctgcagctcagcaacgtcatccggatgtgt
gacgccctggaggtgctcggcgccttccaggaggaggagatgaggaggaaggaggctcct
gaagaggagacgcccatccaggtcacagacaccgagaggttcctcttcaagctgttccaa
gacaggagggcggagctacagcggctggtgacgatgccggagtacgagaacagcagcctg
tctactctgcgggtggaggtcctgaaggagttcaccaacagggcggacgctcgcgggatc
atcttcaccaagacccgacgtagcgccatggccctcacccagtgggtgcagggcaacgcc
aagttcgccgaggtgggggtgagcgccaactacgtcctcgggggaggagaccagagcagc
gtcaaacccatgaccagcgccgaacaaaaggatgttttgaacaagttccgacacggagaa
gtcaacttgctgatcgccaccaccgtcgccgaggaaggcttggacataccggagtgcaac
tttgtgattcgctacggcctcgtgaccaacgagatctccatgattcaggcgcagggccgt
gcccgggcggagaacagcagctacaccctggtggacgtgcacggctccggggtggtggag
aaggagttagtcaacgagttccgccagaaaatgatgaacaaagccatcgtgaagatcggg
aacatggatcaagaggaattcaaaaagaagatcaccacctatcagctggaggctatccag
gagaggaagatgctgctgaataagaagaagaagaagaagcagaacgacagtccgtctgag
gtgtccttcagctgtcgcggctgcaacaaggacgtgtgccgtggagaggacatcgaagta
gtcagtcagatgcaccatgtggtcgtgtccacagagttccggagtctctacaataagaag
gacaacaccaaccttcaggagaggctggtggagtacgagaccaatcagtttgtagcgtgc
aacacgtgtggccagcgatgggggtccatgatgctctaccgtgccatcgagctgcccagt
ctccacgtgaagaacctggtggtcacctgcaaaggcaagaagatcagcaagtgtgccaaa
tggaaagagctggatgtctgcttccctgccttcgacctgtctgcccacgccagcctggtg
gacgaggccctggactcagactga
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