Gadus morhua (Atlantic cod): 115533064
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Entry
115533064 CDS
T10832
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
gmh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115533064 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115533064 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115533064 (sympk)
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115533064 (sympk)
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115533064 (sympk)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115533064 (sympk)
U7-dependent histone pre-mRNA processing factors
115533064 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
115533064
NCBI-ProteinID:
XP_030199121
Ensembl:
ENSGMOG00000002357
LinkDB
All DBs
Position
20:complement(17325117..17341612)
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AA seq
1308 aa
AA seq
DB search
MSDEDVPHVVDMTTSEKVVELLNQAALMGTEEKLTVLKQVQELIINKDPSLLDNFLDEMI
AFQSDKSMEVRKFVIGFIEEACKRDNELLLRLVANLNMLLRDESVNVVKKAILTLTQLYK
VTLQWMVRSKAVTEMQEACWDMLTQMKGDVLALLDSENDGVRTHAIKFTESLIISLSPRT
SDSDVPKRQDADVSLDKIPKDHSYIRYVMLCEEGKSALEQLLKFMVHPAISSINLTTALG
SLATLARQRPMFMSQVVQAYETLHANLPPTLAKSQVSSVRKNLKIHLVAVLKHPCSLDFQ
AQIGTLLLDLGMPQSEISRATPVPREPRKRPRTEQYTEGKKIKMEPALMEDDEEKEEPAA
MSVSKPSPAPAAQTAIDLTAHFLHPLLNAENVANLVLISMVYLPDVMPASFQATYTPVES
AGTDAQIKHLARLMATQMTAAGIGPGLEKSRAREGDSKESLGEDELSQEMLIKRKLPMAH
GQAISVVGTPYPEKQAAIEVPLTKKLPEPILPSTQPKLPGATGKRKVFRLADVVQPLLEG
QIEKLTSGAVKRILDSEKNIAQSGMAHIRVKLLSRLVTQFEGMMKEDVLAFILEDIRSRS
DLAFSLLYQEYNAYLSQLPEGLLDGYDHCLYTLLSGLQEKPEQRDGLFTKLVLEAPVITE
SALEVIRRYCEDESRVYLGMSTLKELIVKRPSRQFQYLHVLLDLSSHEKEKVRSMALQFI
KRMYEKDQLRDYIEKFALNYMQLLVHPNPPSLLFGADKDTEVAAPWTEETVRQCLFLYLS
LLPLNHRLVHELASVYTEAIADIKRSVLRVIEQPIRGMGMNSPDLLLLVETCPKGAETLV
TRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKKEVILALPKLIKLNPI
VVKEVFNRLLGTQHSEGSSSMSPLTPGELLVSLHNIDSTKCDMKSIIKATNLCYGEKNVY
TSEVLAVVMQQLMEQNPLPMLLMRTVIQSLSMYPRLGGFVMNILSRLIVKQVWKHPKVWE
GFVKCCQRTKPQSFSVLLQLPATQLTSVFDRCPELRDPLLQHVHSFTPHQQAHIAPSVMG
VLEASDQPTVMPVGPPVERRVEGAPAQAPPLKAEAAAPPPVKVTLVEDRPVQSHLPPVQS
HLPPVQARLPPVQTHLPPVQTNLPPVQTHLPPVQTHLPPVQSHLPPVQTHLPSVQAHLPA
VQAHLPAVQSHPQPVQQKQPDLRTSEPVEEPMDQGGLDTGVQEKPDPRVTQVEVQRPEES
STPPTETTEEEPMETADPELSELNEPTEDADADRAEESKDGSGEEEPE
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggacgtgccacatgtggtcgacatgaccaccagtgagaaggtggtggag
ctgctgaaccaggccgctctgatggggacagaagagaagctgacggtgctcaaacaggtc
caggagcttattatcaacaaggatccatccctgcttgataattttttggacgagatgatt
gcattccagtcggacaagtccatggaagtgaggaagtttgtcattgggttcattgaagag
gcatgtaaacgtgacaacgagctgctgctgcgtctggtggccaacctgaacatgctgctg
cgggacgagagcgtcaacgtggtgaagaaggctatcctcaccctcacacagctctacaag
gtcaccctgcagtggatggttcgctccaaggcggtgacggagatgcaggaggcatgctgg
gacatgctcacgcagatgaagggcgacgtcctcgccctgttggactctgagaacgacggc
gtacgaacccacgccatcaagttcaccgagtcactcatcatctctctgtcgccgcggacg
tctgactcggacgtccccaagcgacaggacgcagacgtcagcctggacaagatccccaaa
gaccactcctacatccgctacgtcatgctgtgcgaggaggggaagtcagcgctggagcag
ttgctgaagttcatggtgcacccagccatctccagcatcaacctgaccacggcgctaggc
tccctggccacgctcgcccgccagaggcccatgttcatgtcccaggtggtgcaggcctac
gagaccctccatgctaacctgccccccacgctggccaagtcccaggtgagcagcgtgcgg
aagaacctgaagatccacctggtggcggtgctcaagcacccctgcagcctggacttccag
gcccagatcggcaccctgctgctggacctgggcatgccccagagcgagatcagccgcgcc
acgcccgtcccccgggagccccgcaagaggccccgcaccgagcagtacaccgagggcaag
aagatcaagatggagcctgctctgatggaggatgacgaggagaaggaggagccagcagca
atgtcggtctccaaaccctcccccgcccccgccgcccagaccgccatcgacctcaccgcc
cacttcctccacccgctgctcaacgctgagaacgtcgccaacctggtgctcatcagcatg
gtgtacctgccagacgtcatgcccgcctcctttcaggccacctacacacctgtggagtcg
gccggcaccgacgcccagatcaaacatctggctcggctcatggccacgcagatgacggcg
gcgggcatcggcccaggtctggagaagagtcgtgcacgggagggggactccaaagagagc
ctgggggaggacgagctgtcccaggagatgctgatcaagaggaagctgccaatggcccac
ggccaggccatctccgtggtgggcaccccctacccggagaagcaggccgccatcgaggtg
ccgctcaccaagaagctcccggagcccatcctgccctccacacagcccaagttgccgggt
gcgacgggcaagaggaaggtgttccggctggcggacgtggtgcagcccctgctggagggc
cagattgagaagctcacgtccggggccgtcaaacgcatcctcgactctgagaagaacatt
gcccagagcggcatggcccacatccgggtgaagctgctgtcgcggctggtgacccagttc
gagggcatgatgaaggaggacgtgctggccttcatcctggaggacatccgcagccgcagt
gacctggccttctccctgctgtaccaggagtacaacgcctacctcagccagctgcccgag
ggcctgctggacggctacgaccactgcctctacaccctgctgtcgggcctgcaggagaag
cccgagcagagggacggtcttttcacaaagctggttctggaagcacccgtcattacagag
tcggcgctggaagtgatccggcgatactgtgaggacgagtcccgggtgtatctgggcatg
agcacgctgaaggagctcatcgtcaagcgaccgtcgagacagttccagtacctccacgtc
ctgcttgacctcagctcccacgagaaggagaaggttcgcagcatggccctgcagttcatc
aagcgtatgtacgagaaggaccagctacgggactacattgagaagtttgccctgaactac
atgcagctgctggtccatcccaaccccccctctctgctcttcggcgccgacaaagacacg
gaggtggcggcgccatggacggaggagacggtgaggcagtgtctgttcctctacctctcc
ctgctgcccctcaaccacaggctggtccacgagctggcctccgtctacaccgaggccatc
gccgacatcaagcgcagcgtgctgcgtgtcatcgagcagcccatccgtggcatggggatg
aactcccccgacctcctgctgctggtggagacgtgtcccaaaggagcggagacgctggtg
acccgctgcctccacatcctcaccgacaaagtgcccccgtcgccagagctggtggagagg
gttagggacctgtaccacaaacgagtgcctgacgtccgcttcctcatccccgtcatcaac
ggcctggagaagaaagaagtgatcctggctctccctaagctgatcaaactgaaccccatc
gtggtgaaggaggtgttcaaccggctcctgggcacacagcacagtgaaggcagttcatcg
atgtcgcccctcaccccaggggagctcctcgtctctctgcacaacatcgactcaaccaag
tgtgacatgaagtccatcatcaaagccaccaacctgtgctacggggagaagaacgtgtac
acgtcggaggtgctggcggtggtgatgcagcagctgatggagcagaaccccctgcccatg
ttgctgatgcggaccgtcatccagagtctcagcatgtacccccggctgggcggcttcgtc
atgaacatcctgtcccgcctcatcgtcaagcaggtgtggaagcaccccaaggtgtgggag
ggcttcgtgaagtgctgccagaggaccaagccccagtcgttctccgtgttgctgcagctg
cccgccacccagctgaccagcgtgttcgaccgctgccccgagctcagggacccgctgctg
cagcacgtccactccttcaccccccaccagcaagcccatatcgccccctcggtcatgggc
gtcctggaggccagcgatcagcctacggtcatgcctgtgggcccccctgtggagagacgg
gtcgaaggggcccctgctcaagctcccccactaaaggcagaagctgctgctcctcctcca
gtgaaggtgacgctggtggaagaccggcctgtccagtcccacctcccccccgtccagtcc
cacctaccccctgtccaggctcgcctcccccctgtccagacccacctcccccctgtccag
accaacctcccccctgtccagacccacctcccccctgtccagacccacctaccccctgtc
cagtcccacctcccccctgtccagacccacctaccctctgtccaggcacatctccccgct
gtccaggcacatctccccgctgtccagtcccatccccagccagtccaacagaagcagcca
gacctcaggaccagcgaacccgtggaagaacccatggaccagggagggctggacacgggg
gtccaggagaaaccagaccctagggtgacccaggttgaggtgcaaaggccagaggagtct
tcaactcctccaacagaaaccacagaagaagaaccaatggagacggctgatcctgaactg
tcagagttgaatgaaccaaccgaagatgccgatgcagaccgcgcagaagagtcaaaggat
gggagcggagaagaagagcctgaataa
DBGET
integrated database retrieval system
