Gadus morhua (Atlantic cod): 115533651
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Entry
115533651 CDS
T10832
Name
(RefSeq) E3 SUMO-protein ligase RanBP2-like isoform X1
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03013
Nucleocytoplasmic transport
gmh03250
Viral life cycle - HIV-1
Brite
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115533651
Chaperones and folding catalysts [BR:
gmh03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
115533651
Ubiquitin system [BR:
gmh04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
115533651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
Zn_ribbon_RanBP
Pro_isomerase
IR1-M
WH1
TPR_1
TPR_7
TPR_14
TPR_2
TPR_CcmH_CycH
ARM_TT21_C
TPR_16
Motif
Other DBs
NCBI-GeneID:
115533651
NCBI-ProteinID:
XP_030200111
Ensembl:
ENSGMOG00000007071
LinkDB
All DBs
Position
20:12988984..13015273
Genome browser
AA seq
3222 aa
AA seq
DB search
MRRSKAEVDRYISSVHSSSPSLKEKPIKGFLFAKLYFEAKEYELAKRHVSEYLKIQERDP
KAHKFLGQLFEKEGEVDKAVGCYKRSVDLNPAQKDLVLKVAELLCSKDPTDSRADFWVEK
ANKLLPGNPAVFNLKEKLLSRQGQQGWNRLFDLLQSELAVRPADVHVNIKLVELYSKDGR
LDEAVKHCLSHENKGQLRKSLDWNSVVADTLQEYLAQPGVSNNEKLCRRLKGELLLAHCN
LLRLKLSVSGVLPALDALRSFDEAMRSVSATAGGQTDELCEVFGEMRAHLYLHTGTLLLK
MAQEREQNWRAVTDLATLCFLLSYQVPRPKLKLTKGDQLAPKLLELMANDRQSQAGHMLL
NLSSDPQTFITEVVEAFGNRIGQSSLFELLFGEQSSTSASFMANDDFASINTQVPEFSQL
AKWDNGSIMLHGGDLQHLSWLGLQWTLLAQRPALREWLKQLFPRLNLETSKLDTNAPESI
SLLDLEVFVCGVVFCCHSQLQETAKISCVGQQPFSEPRCLPLPLLRSLSTDRQREWWDAL
YSLIHKQALTGTSAKLRMVVQHGLSSIRAGEKHGLQPALAISWAQHLSQMGMEVNSYYDQ
KEYIGRSVHYWKAALPLLDKIKNRRSIPEPLDPLFIHFSNRDIQISIVKGYEEEAMIGFA
SLLDVEGKTEEAISTLETINNVSSSWHLARIYQRLSEEAGSGVEETQDRCIMFLKKFRTY
LSKIYHSDDLEQLPISMEEVMDLLNEVNQQLEEIGEIAEEKEEKGGARRAPTRSTPETTA
TFSRINFPTTSPNKSTVSPSKIHLMSPKTPPHWVEDQKSLLQMLCQQVEALKNEVHDLKH
NSSGNLGSPHHQMYGDSYGADGLQEPYTPVPSFQAPQLTDATTGQSGYYNQSYNSQYPPR
TSANVTPTKGSMYTMNRMPPQPHMYSYQQPNHTPPMQPALPCVYPPQEQVFGAPLRFESP
ATNLLSPYSEEHYSRGVTQPTTNLPLPEPGYFTKPSPVTVQPKSIEGKAMDFGKISFGQI
ALSDIPKVPSLVAGPTSQTAQSSDFKFNSNNFKSNDGDFTFSASPAKHSESLLGLLTSDI
STKTDFEQKPGTQDQSTSQGSIFTFGTKNLSGFSFASATTNTGIPGAFEKVEKPFSFGDV
NKPIDEVEKQPQVEQNQPLESDNDSTQLEDDDDGPHFEPIVPLPDKIDVKTGEEEEQELF
CNRAKLYRFEMETKEWKERGIGNIKILKHNISGKVRILMRREQVLKICANHYINADTLLK
PNAGSDKSWVWNAIDYADEQPKPEQLAIRFKTAEEAMLFKTKFDEAQQNVPKSPTKHCLQ
EKRDVGYKLNETKSSFGAQFALKDGEWDCNVCYVRNKPKDIQCVACQTKNPQTVSEPEGT
TVTDSKPPPPLGGPTAASSFTFKFGTESSKNSSSTPFSGFGAFGSSNPPFSFVTSGQTLA
DTGTSAFGAQFNKKQGQWDCDACYVRNESASNSCVACQAPHSSTASGVKKPSETAGPPPE
TAAAPTTESQSSAFGSSFGSQFGMKAGQWDCDACYVRNESSSTSCVACQTPQASAAAVVS
GTFGPPAQMAAGPTSKPQSSAFGSSFGSQFGMKQGQWDCDACYVRNEFSSKSCVACQTPQ
ASAASVVSQTAGPPAQMAAAPTSKPQSSAFGSSFGSQFGMKQGQWDCDACYVRNESSSTS
CVACQTPQASAASVITEKAGPPTQMKAAPTTKPLSSAFGSNFGGQFGMKPGQWDCDACYV
RNESSSKICVACQTLNPLSKTTSPTAKAPCPTSSLGAMFAKKVGEWDCDTCLVRNNASVS
QCLSCQTANPNQSTSGPGTSIGISSSTFSFSFGDKTASSQSAVTTLTSGFGSSNGSSFKF
GVPHSEIPVTTASSFSFALPTQAGGFKFGAQETTNVVSAMKTGPVTASTVLKNLADQHKE
TMSTQSIDGTKEDENALFTGRHDAFSFAALATSSSGDFQFGQNDPSFKGFSRAGENLFSS
NQGSPSKVGSSAAQEEEDMYKTEENDDIQFEPVVQLPEKVDLVTGEEEEQVLYSQRVKLF
RFDTGLSQWKERGLGVLKFLKNASNGRLRVLMRREQVLKVCANHWITTTMNLKPLAGSDK
AWMWLANDFSDGDARLEQLAAKFKTPELASEFKQKFEECQRLLLDIPLQTPHKLVDTGRT
AHLIQKAEEMKTGLKDLKCFLTDGKTKLCDESAANLTPSSNVMGLTVKPHTEGTGPTLEW
DNYDLRGEPLDDSADTSVYASPLASSPVRKNLFRFGESTSGFSFSFQPGISPSKSPAKLN
QSGVSVGTDDEQDSTQDEDKDGQYFEPIVPLPDLVEISTGEENEQVVFNHRAKLYRYDKD
LNQWKERGIGEIRILQNFDTRRVRLIMRRDQVLKICCNHWITTAMKLEMMKGSEKAWVWS
ALDFTDAKDGRVEQLAVRFKLQDVANSFKEVFEKAKNAKDSETPMTPVASRVATPQETMP
AMTTPTQVCGKEAIAILEEAIKERTDLISDSQPLTAITCSPSNPMKMVVSPPKFVFGTDT
LQKIFGPTKSSPEPEINSSNSRTEDNLNVSQSSASPAFKIPEKVPSSAEGSSENWVSDVE
VVYIREPTPEQAALAESLLLPLTFFCYKNEPSYTSDDETDDEDYESAVNSLNGKLYPDPT
ARGATASDDPDCQVVWEKKPTPEEEEKAKSLQLPPTFFCELGTSDSEGDKAEEFETEVRK
VQEALIAEVKSSTGASETLPSGQLSGTEDAGSTRDAVCTEDAVCTEDAVCTEDAVCTEDA
VCTEDAVCTEGAVSTLAQGEAISDQASEAQNTVPSNGCPIDLSTKKSKDSDLTVDAATPS
LANIFSTTSQDINFGFNTLGGGSFSFAELAQNTGDGEYAFGSRDTNFSWANAGASVFGGA
AKPKKNGEEGEGDEGEAADEVDIHFEPIVSLPEVETKSGEEDEEILFKERTKLYRWDRGL
NQWKERGVGDIKILYHPAKGTYRVIMRREQVLNVCANHIITPIMELKPMNSSANALVWTT
TDYAEGNASVEQLAAKFKNADLAEKFKKTFLECQQRLSQPSEDATLQTLSRAQEHSRDTN
PRVFLTLAADDETLGTIGVELYSHAVPKTAENFRVLCTGGKGFGLKNSIFHRVIPNFMCQ
GGDFTNHDGSGGKSIYGGQFEDENFDIRHTGPGLLSMANRGRDTNNSQFFITLKKAEHLD
FKHVVFGWVHEGMEVVRAMAELGSASGKSSKKISIVDCGQVS
NT seq
9669 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgaagtaaggctgaagtggatcgctatatctcttcagtacacagttcgtcccct
tcgctcaaagagaagccaatcaaaggctttttatttgccaagctgtattttgaggcgaag
gagtatgaacttgctaaaagacatgtgtccgagtatcttaaaatccaagagagggacccc
aaagcacacaaattccttggtcagctctttgagaaagagggagaagttgacaaagcagtt
ggatgttataagcggtcagtggacctgaacccagcacagaaggacctggttctgaaggtg
gctgagttgctgtgcagtaaggatccaactgacagcagggcagatttctgggtggagaag
gccaacaagctgctccctggtaacccagctgtcttcaacctcaaggagaagctgctcagc
cgtcagggccaacagggatggaaccgccttttcgatcttctgcagtctgagttagcggtg
cgcccagccgatgtccacgtcaacataaagctggttgagctgtactctaaagatggccgc
ctggacgaggctgtgaaacactgcttgagccatgagaataagggccagctacgcaaaagt
ctggattggaactctgtggtggccgacacactgcaggaatacctggcccagcccggtgtc
tccaacaatgaaaagctgtgtcgtcgccttaaaggagagctgcttctggcccactgcaac
ctgttgagactcaaactatcagtcagtggagtgctgcccgcacttgatgccctgagaagt
tttgatgaagccatgcggtctgtgagtgccacagcaggtggccagacagacgagctgtgc
gaggtgtttggagaaatgcgagctcacctttacctgcacactggtaccctcctactgaaa
atggcccaagagcgtgagcagaactggagagctgtgaccgacttggccaccctctgcttc
ctgttgtcttaccaggtgcccagaccaaagcttaaacttactaaaggagatcagttggca
cccaagctgttggagctgatggccaacgatagacagagccaggctgggcacatgctgctc
aacctcagctcggacccacagacctttatcaccgaggtggtggaagcatttggtaatcgc
atcgggcagagctctctttttgagctcctgtttggagagcagtcctccacaagtgcctcc
ttcatggccaatgatgacttcgcttccatcaacactcaagtcccagaattttcccagctg
gctaagtgggacaatggttccatcatgctccatggaggagacttgcagcacctgagctgg
ctgggcctgcagtggaccttgttggcccagaggccagccctgcgagagtggctcaagcag
ctcttcccaagactcaacctggaaacatccaagcttgacaccaatgctcccgagtccatc
tccctgctggacctggaggtgtttgtgtgcggggtggtgttctgctgccatagccagctc
caggagactgctaagatcagctgtgtcggccagcagcctttcagcgagccccgatgcctt
cctcttcctcttctccgctccctgtccactgatcggcagagggagtggtgggatgcactc
tacagtctcatccataaacaagccctaactggcacgtcagccaagctgcgtatggttgtg
cagcatggtctgagttcaatcagagcaggagagaaacacggcttgcagccagcactcgct
atttcctgggctcaacatctcagccagatgggcatggaggtgaactcgtactatgaccag
aaggaatacattggccgtagtgtccactactggaaggctgctcttcctctcttggacaag
atcaaaaacaggcgaagcataccagaaccccttgaccccctcttcattcatttctccaac
agagatatccagatctcaattgtgaagggctatgaggaagaagccatgataggatttgca
tctctcttggacgtagagggtaagacggaagaagccatttccaccctggaaacgatcaat
aacgtgtcatcttcctggcatcttgcacggatctaccaaaggctgtcggaggaggcaggc
agtggggtagaggagacacaagaccggtgtatcatgttcctcaagaagttcagaacttac
ctgtcgaagatctaccattcagatgacctggagcagctgccgatatccatggaagaggtg
atggacctcttgaatgaggtgaatcagcagctggaagagattggtgagattgcagaggag
aaagaggagaagggaggggcccgaagagcaccaacccggtccacaccagaaactaccgca
actttctcccgcatcaacttcccgaccacgtcgcctaataaaagcacagtttctccctcc
aaaatacacctgatgtctcctaagacaccaccgcattgggtcgaggatcagaagtctctg
ctacagatgctctgccagcaagtagaagctctcaaaaatgaggtccacgatctgaagcac
aattctagtgggaaccttggctcccctcatcatcagatgtatggggacagctatggagcc
gacggcctacaagagccctacaccccggtaccgtcctttcaagcaccacaattaacagat
gctaccacagggcagtctgggtactacaaccagtcttataactctcaatatccacctcgc
acatcagcaaatgtgacccccacaaagggttccatgtacaccatgaatcgtatgccccca
caaccgcatatgtattcctaccagcagccgaaccacacaccaccaatgcaacctgcactg
ccctgcgtctaccccccacaagaacaagttttcggtgcacctcttcgctttgagtcacca
gcaaccaaccttctctcgccgtatagtgaggaacattacagccgtggtgtaactcagcca
acaaccaacctgccccttcctgagcctggttactttaccaaaccctctccggttaccgtt
caaccaaagagcattgaggggaaagcaatggattttgggaaaatctcttttggccaaata
gcattgtccgacatcccaaaggttcctagccttgtcgctgggccaactagtcaaactgca
caatcttcagatttcaaattcaactctaataatttcaaatccaacgatggagactttacc
ttctctgcttctcctgccaagcacagtgagagtctgcttgggctgctgacttcggatatt
tccactaaaacagactttgagcagaagcctgggactcaggatcaatccactagccaaggg
agcatcttcacatttggaactaaaaatctttctgggttcagtttcgcaagtgcaacaaca
aacactggaattccaggcgcatttgaaaaagttgagaagccatttagttttggggatgtc
aacaagcctatagatgaagttgaaaagcaacctcaagtcgagcaaaatcagccactggaa
agtgacaatgacagcacccagttagaggatgatgatgatggtcctcattttgaaccaatt
gtacctctgcccgataagatagatgtcaaaacaggtgaggaggaagaacaggaattgttc
tgtaatagggccaagctgtaccgtttcgaaatggagacaaaggagtggaaagagcggggt
attggaaatataaagattttaaagcataacatttcaggaaaggtgcgaatcttaatgagg
agagaacaagtccttaaaatctgtgccaaccactatatcaacgctgataccctacttaaa
cccaatgctggctcagataagtcatgggtctggaatgccattgattatgcagatgagcag
cccaaacctgaacaactagccatccgtttcaaaactgcggaggaggcaatgcttttcaaa
acaaagtttgatgaagctcaacaaaatgtgcccaagtcaccaacgaagcattgcttgcag
gaaaagagagacgtgggctataaactgaatgaaaccaaatcatcatttggagcccagttt
gcacttaaggacggggaatgggattgcaatgtttgctatgtgcgaaacaagcccaaagat
attcaatgtgtagcttgtcagaccaaaaatccacaaactgtgtcagaaccagaaggaacg
acagtcactgactccaaaccaccacccccacttggaggaccaacagcagcaagtagcttc
actttcaaatttggcactgagtcttcaaagaatagttctagcactccattttcaggattt
ggggcatttggttcttctaatcctccattttcatttgttaccagtggtcaaacccttgcc
gatactggaaccagtgcatttggagctcagtttaataagaagcaaggtcaatgggactgt
gatgcatgttatgtaagaaatgagtcggcctcaaacagttgtgttgcctgtcaagcacct
cattcctcaacagcatcaggtgtcaaaaaaccatcagaaaccgctggtccacctccagaa
acagcagctgccccaaccaccgagtctcagagctctgcgtttggctcgagtttcggaagc
caatttgggatgaaggcaggtcaatgggactgtgatgcatgttatgtaagaaatgagtca
tcatcgacgagttgtgttgcctgtcaaactcctcaggcctcagcagctgccgttgtctca
ggaacattcggtccacctgcacaaatggctgctggcccaaccagcaagccccagagctct
gcgtttggatcgagtttcggtagccaatttgggatgaaacaaggtcaatgggactgtgat
gcatgttatgtgagaaatgagttctcatccaagagttgcgttgcctgtcaaactcctcag
gcctcagcagcatcagttgtctctcaaacagcaggcccacctgcacaaatggcagctgcc
ccaaccagcaagccccagagctctgcgtttggatcgagttttggtagccaatttgggatg
aaacaaggtcaatgggactgtgatgcatgttatgtgagaaatgagtcctcatcgacgagt
tgtgttgcctgtcaaactcctcaggcctcagcagcatcagttatcacagaaaaagcaggg
ccacctacccaaatgaaagctgccccaaccaccaagcctctgagttctgcgtttggctcg
aatttcggtggccaatttgggatgaaaccaggacagtgggactgtgatgcatgttatgta
agaaatgagtcctcatccaagatttgtgttgcctgtcaaactttgaatcccttatccaaa
acgacttcccctacagctaaagcaccatgccctacttcatcactgggagccatgtttgct
aagaaagttggggagtgggactgtgacacttgtttggtcaggaacaatgcttcggtcagt
caatgtttgtcctgtcagacggctaatcctaaccaaagtactagtggccctggtacttca
ataggcatcagtagctcaacatttagctttagttttggagataaaactgcatcgagtcaa
tcagctgtaactaccttaacttctggctttggtagcagcaacggttcttcctttaagttt
ggagtgccccattcagaaattcctgttactactgcttcaagcttttcatttgcattgccc
acccaagctgggggattcaagtttggggctcaagaaactacaaatgtagtatctgcgatg
aaaactggaccagtgactgcttctacagtcctcaaaaacttagcggaccaacacaaagaa
acaatgtctacacaatctattgatggaactaaggaagacgaaaatgcactatttactggt
aggcatgatgcattcagttttgcagccttggccacctcttctagtggggactttcaattt
ggccagaatgatccctcttttaagggcttctctcgtgctggcgaaaatctgttttcatcc
aaccaggggtctccaagcaaggtaggctcttcagctgcccaggaagaggaggacatgtac
aagacggaggagaatgatgacatacagtttgaacctgttgttcagttgccggaaaaggtt
gatctggtcacgggagaggaggaagagcaggttctgtactcccagcgtgttaagctgttt
cgttttgataccggcctaagccaatggaaagaacggggcttgggtgtcctcaaatttctc
aaaaatgcttctaatggcagactcagagttttaatgagaagagagcaggtcctgaaggta
tgtgccaaccactggatcaccaccacaatgaatctcaagcctctagcagggtcagacaaa
gcatggatgtggttagcaaatgatttctcggatggagatgctagactagaacagctagca
gccaagttcaaaacaccagagctagcatcggagttcaagcaaaagtttgaagagtgccag
agactcctactagatatcccattgcagacgccacacaagcttgttgatactggcagaaca
gcccatctcattcagaaagctgaggaaatgaagactggtttaaaagatttaaaatgtttc
ctgaccgatgggaaaactaaactctgtgatgaaagcgcagcaaacctcacaccatctagc
aatgtgatggggctgaccgtgaagccccacactgaaggcacaggtcctactttggaatgg
gataactatgatcttagaggagaacctttagatgactctgctgacacttctgtatatgct
tctcctctagcaagcagtcccgttagaaagaacctatttcgatttggagaatccaccagt
ggttttagcttcagttttcagcctggcatcagcccttccaagtctcctgctaagctcaat
cagagcggagtgtcagtgggcactgatgatgagcaagattcaactcaagatgaggacaaa
gatggtcagtactttgaacccattgtacccttgcctgatcttgtggagatttctacagga
gaggaaaatgagcaggtggtcttcaatcaccgggctaaactgtaccgttacgacaaagac
cttaaccaatggaaggagaggggcatcggagaaatcaggatcctgcagaactttgacact
agacgagtgaggcttatcatgagacgagatcaggtgctcaagatttgttgcaaccactgg
attacaacagcaatgaagctagaaatgatgaaaggatctgagaaggcctgggtgtggagt
gctttagactttactgatgctaaagatggcagagttgaacaattggctgtgaggttcaaa
ctacaggatgtagcaaattcattcaaagaggtatttgagaaggccaaaaatgcaaaggat
agtgagacaccaatgaccccagtggcttcaagagtggccacacctcaggaaacaatgcca
gccatgactacacctacacaagtatgtggaaaagaagcgattgccatcctggaagaagcc
attaaagagcgcacagacctgatttccgacagtcagccattgacagctataacttgcagc
ccttcaaaccctatgaagatggtggtttctccccccaagtttgtctttggtacagatacc
ctccaaaaaatctttggcccaaccaagtcttctccagagcccgaaataaattcatctaac
tccaggaccgaagataacctcaatgtgtcccagtcatctgcatcccctgcattcaaaatc
ccagagaaagtacccagttctgctgaaggaagtagtgaaaattgggtctctgatgttgag
gtggtgtacataagggagcctacgcctgagcaggcagcgttggccgagagtttacttctg
ccactgactttcttctgctacaagaacgaaccaagctacaccagcgacgatgaaactgat
gatgaagactatgaatctgctgtgaactccttaaacggaaagctctaccctgacccaacg
gcgagaggagccacagcatctgatgatccagactgccaggtggtctgggagaagaagcct
acgccagaagaggaggagaaggcaaagagcctacaactccccccaaccttcttctgtgaa
ctgggcaccagtgattcagagggagacaaggctgaggagtttgagacagaggtccgcaaa
gtacaagaggcactgattgccgaggtgaagtcttccactggtgcttcagagacgctgcct
tcaggccagctgtccggcacggaggatgcaggcagcacaagggacgcagtctgcaccgag
gacgcagtctgcaccgaggacgcagtctgcaccgaggacgcagtctgcaccgaggacgca
gtctgcaccgaggacgcagtctgcaccgagggcgcagtcagcaccttggcacaaggggag
gcaatctctgatcaggcatccgaggcccagaatactgtcccaagcaacggttgtcccatc
gatctctcaacaaagaaaagcaaagattcggatttgactgttgatgctgcaactccttca
cttgccaatatcttcagcactactagtcaagacatcaacttcggctttaacacgctcgga
ggcggaagcttctccttcgcagaacttgcacaaaacactggagatggagaatatgccttt
ggatcgagagacaccaacttctcctgggcaaatgctggagcctctgtgtttggtggtgca
gccaaaccgaagaagaatggcgaagagggggaaggggatgaaggggaggctgcagatgaa
gtggacattcacttcgagcccatagtgtctctgccagaggtggagaccaagtcgggtgag
gaggacgaggaaatcctgttcaaggagcgcaccaagctgtaccgctgggaccgcgggctc
aaccagtggaaggagcgcggcgtgggagacataaagatcctctaccaccccgccaagggc
acctaccgcgtcatcatgaggagagagcaggtgctgaacgtgtgcgccaatcacatcatc
acacccatcatggagctcaagcccatgaactcgtcagccaacgctctggtctggaccacc
accgactatgcagagggcaatgctagtgtggagcagctggcagccaagttcaagaacgca
gacctagctgaaaaattcaagaagacctttttggagtgtcagcagcggttgagtcagccc
agtgaggacgccaccttgcagacgttgtcccgagcccaggaacattcccgggacactaat
ccccgggttttcctgaccctcgccgctgatgacgagaccctcggcaccatcggcgttgaa
ctgtattcccacgctgtcccaaagacggcagaaaacttccgggtgctctgcacgggaggc
aagggctttggtctgaaaaactccatcttccacagggttatacccaacttcatgtgtcag
ggaggtgacttcacaaaccacgatggaagcggcggaaagtccatctacggtggacagttt
gaagatgagaactttgacatccgacacacgggcccgggcctcctgtccatggcgaaccgc
ggtcgggacacaaacaactcccagttcttcatcactctgaagaaggccgagcatctggac
tttaaacacgtggtgtttggctgggttcacgagggcatggaggtggtgcgggcgatggct
gagctgggctctgcgtccggcaagtccagcaagaagataagcattgttgactgtggacag
gtttcatag
DBGET
integrated database retrieval system
