Gadus morhua (Atlantic cod): 115533943
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Entry
115533943 CDS
T10832
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115533943 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115533943 (cpsf2)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115533943 (cpsf2)
U7-dependent histone pre-mRNA processing factors
115533943 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
115533943
NCBI-ProteinID:
XP_030200321
Ensembl:
ENSGMOG00000008761
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Position
21:complement(12828550..12837425)
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AA seq
805 aa
AA seq
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MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMEIIDAMKRHVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLFQSRNNSEDFNLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCILESVSRPSLLITDSFNALYVQPRRKQRDEQLLTNVMETLRGDGNVLIAADTA
GRVLELAQLLDQIWRTRDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDQRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCRDAKNSVILTYRTT
PGTLARYLIDNPGERMLDLEVRKRVKLEGKELEDFLEKDKVKKEAAKKLEQAKEVDVDSS
DESDMEDDLDQPAVVKTKHHDLMMKGEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEV
IRPEDFLVPELQATEEEKSKLEAGLSNGDEPMDQDLSVVPTKCTSSIENIEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPDASADLAESCRASSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLHFCKAKDTELAWIDGVLDMRVAKVDTGVLPEAVKGEEEVGET
MLTEDGAGQDPAMDVGVTGETAGEGEGEEGGVALAAVAKRAMKSLFMEDEREPSDESDVI
PTLEPLPTQEVSGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGR
IGLEGCLCDDYFKIRELLYQQYAVV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgacatccattatcaagttgacagccgtgtcgggggttcaggaggagtctgccctgtgc
tacctgcttcaggtggatgaattccgcttcctccttgactgcggctgggatgaaagtttt
tctatggaaatcatagatgcaatgaaacgacacgtccaccaggtcgacgccgtgctcctc
tcccaccctgatcccctgcatctaggtgccttgccctacgctgtggggaagctgggttta
aactgccccatctatgctacgatacctgtatacaagatgggccaaatgttcatgtatgat
ctatttcagtctcggaacaacagcgaagacttcaatctcttcacacttgatgacgtggac
agcgcctttgacaaaatccagcagttaaaatactcccagattgtgaatttaaaagggaaa
ggacacggcctgtccatcactccccttccagccggacacatgatcggtggaaccatctgg
aagatcgtcaaagacggagaggaggagattgtctatgctgtggacttcaaccataagaga
gagatccatctcaacgggtgtatactggaaagcgtgagccggccctccctcctcatcacg
gactccttcaacgccttgtacgtgcagccgcgtcgcaaacagagagacgagcagctcctc
accaatgtgatggagaccctccgcggcgacggcaacgtcctcatcgccgcggacacggcc
ggccgcgtgctggagctggcccagctgctggaccaaatctggaggacgagggacgcgggg
ctgggcgtgtactccctagccctgctcaacaacgtcagctacaacgtggtggagttctcc
aagtcccaggtggagtggatgagtgacaagctcatgaggtgcttcgaggaccagcggaac
aaccccttccagttccgccacctgtcgctgtgccacagcctggcggacctggcccgcgtc
cccagccccaaggtggtgctctgcagccagcccgacctggagtcgggcttctcccgggag
ctcttcatccagtggtgccgcgacgccaagaactcggtcatcctgacctaccgcaccacg
cccggcaccctggcccgctacctcatcgacaaccccggggagaggatgctggacctggag
gtccgaaaacgagtaaagcttgagggcaaggaactggaagatttccttgaaaaggacaag
gtcaagaaagaggcagccaagaagctggagcaagcaaaagaggtggacgtggactcgagc
gacgagagcgacatggaggacgacctggaccagccggccgtggtgaagaccaaacaccac
gacctgatgatgaagggcgagggcagccgcaagggcagcttcttcaagcaggccaagaag
tcctaccccatgttccccacgcacgaggagaggatcaagtgggacgagtacggcgaggtc
atcaggccggaggacttcctggtgcccgagctgcaggccacggaggaggagaagagcaag
ctggaggccggcctgtccaacggcgacgagcccatggaccaggacctctccgtggtgccc
accaagtgtacctccagcatcgagaatatcgagatcagggccagggtgacgtacatcgac
tacgaggggcgctcggacggcgactccatcaagaagatcatcaaccagatgaaacccagg
cagctggtgatcgtccacgggccgccggacgccagcgccgacctggccgagtcctgccgg
gcctccagcaaggacatcaaggtgtacacgcccaagctgcaggagaccgtggacgccacc
agcgagacccacatctaccaggtgcggcttaaggactcgctggtcagctccctgcacttc
tgtaaggccaaggacacggagctggcctggatcgacggcgtgctggacatgcgcgtggcg
aaggtggacacgggcgtgctgccggaggccgtgaagggcgaggaggaggtgggcgagacc
atgctgacggaggacggcgccggccaggaccccgccatggacgtgggcgtcaccggggag
acggcgggcgagggagagggcgaggagggcggcgtggccctggcggcggtggccaagcgc
gccatgaagagcctgttcatggaggacgagcgcgagccctccgacgagagcgacgtcatc
cccacgctggagccgctgcccacccaggaggtctcgggccaccagtcggtgttcatcaac
gagccgcgcctctccgacttcaaacaggtgctgctgagggagggcatccaggccgagttc
gtcggcggcgtgctggtgtgtaacaacatggtggccgtccgcaggacggaggcagggcgc
atcggccttgaaggctgcctgtgtgatgactacttcaagatccgggagctgctgtatcag
cagtacgccgtggtatag
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integrated database retrieval system
