Gadus morhua (Atlantic cod): 115533977
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Entry
115533977 CDS
T10832
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM39-like
KO
K12015
tripartite motif-containing protein 39 / bloodthirsty-related gene family protein [EC:
2.3.2.27
]
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gmh04121
]
115533977
Enzymes [BR:
gmh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115533977
Ubiquitin system [BR:
gmh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115533977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
RING_XB3-XBAT31
ANCHR-like_BBOX
U-box
zf-RING_10
zf-Nse
CdvA
Prok-RING_4
CAP_N
TRAF3_RING
Sina_RING
zf-RING_6
ATG17_like
AAA_13
Mitofilin
Laminin_II
COG5_C
LMBR1
ALS2CR8
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
115533977
NCBI-ProteinID:
XP_030200371
LinkDB
All DBs
Position
21:complement(107340..131152)
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AA seq
542 aa
AA seq
DB search
MASANTSWPEENFSCSICLDVFSSPVSTPCGHNFCRACITKFWDEQVKYKCPVCNELFNT
RPDLRVNILISELVDRFGTSLRVKEQPCVEPAEVPCEVCTGTQLKAVKSCLVCLTSYCQT
HLEPHHRVAGLKKHRLVEPMDRLDDRMCKKHDRLLELFCQTEQVCVCQFCTETDHKSHPV
IPLKEEYEEKTAKLGKIEAEVKQLIQERQKNIQDIKDTVKRSKVDANREIADGVQVLTAL
MCRIEKCRDDLNQMVKEKLKSTVKQAEDLIKGLEQEIEDLTNRSSEVKQLSHTKDHLHFL
QAFRSLKDPPPTRDWTTVEVRPPSYVGTLRRSLDQLEETLNMEMKKLRDAELKRVRQYEV
DVTLDPDTAYPWLILSEDGKQVHDGGVRKELPDNPKRCTQCTCVLTRQSFSSGRFYFEVQ
VKDKTAWWLGVARESIDRKGRTDWTPETGYWTLHYYNKDVSVFYDKPAVCVPLRAELQKV
GVFVDYDEGLVSFYDVEARVHLYSATGCTFSEPLYPILGPGPLEHKGDNTAPLIISPVNQ
TD
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgctaacacctcctggcctgaagagaacttttcatgttccatctgtctggat
gtgttcagcagcccagtttccacaccatgtggacacaacttttgcagagcctgtattact
aagttctgggatgaacaagtcaagtacaaatgtcccgtttgcaacgagcttttcaacaca
agacctgatttacgggtcaatatcttaatttcagagttggttgatcggtttggaacgtcc
ctacgagtaaaagagcagccttgtgttgaaccagcagaagttccctgtgaagtctgtact
gggacccagctgaaggccgtgaagtcctgcctagtgtgtcttacctcttactgccaaacc
cacctggagccacaccatagagtcgcaggcctgaagaaacatcggctggtcgagcctatg
gaccgtctggacgacaggatgtgtaagaaacacgaccgacttctggagctcttctgccag
actgaacaggtgtgtgtgtgtcagttctgcacagagacggaccacaagtcccatcctgtt
atacctctaaaggaggaatatgaagagaagacggccaagctggggaagatagaggctgaa
gttaagcagttgatccaggagagacaaaaaaatattcaggatattaaagacacggttaaa
cgcagcaaagtagacgcaaacagagagatagctgatggtgtgcaggtcctcactgctctg
atgtgccgcattgaaaagtgccgggatgatctcaaccaaatggttaaagagaaactgaaa
tccacagtgaaacaagcagaagacctcatcaaagggctggagcaggaaatagaagatctg
accaatagaagctcagaggtgaagcagctctcacacactaaagaccacctccacttcctc
caggccttcagatccctgaaggatcctccacccaccagggactggaccacggtggaggtc
cgtcctccgtcatacgtagggaccttgaggagatccctggatcagctggaggagacactg
aacatggagatgaagaagctgcgtgatgctgaactgaagagggtccggcagtatgaagta
gatgtgactctggatcctgatacagcttatccctggctcatcctgtctgaggatgggaaa
caagtacatgatggaggtgtgaggaaggaactcccagacaaccctaagagatgtacacag
tgtacatgtgttctcacgaggcagagcttctcctcggggagattttactttgaggtccag
gttaaagacaagactgcatggtggttaggagtggccagagagtccatcgacagaaaaggt
cggacagactggacccctgagacgggttactggactcttcactactacaacaaggatgtg
tcggtattttatgataaacctgctgtctgtgtccctctgagagctgagctccagaaggtg
ggggtgtttgttgattatgatgagggtctggtctccttctatgatgtggaagccagggtt
catctctactctgctactggctgcaccttcagtgagcctctctatccaatcctcggccca
ggtccccttgaacataaaggtgacaacactgcccccctgatcatctcacctgtcaatcaa
acagactag
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