Gadus morhua (Atlantic cod): 115534523
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Entry
115534523 CDS
T10832
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115534523 (taf1b)
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
115534523 (taf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-GeneID:
115534523
NCBI-ProteinID:
XP_030201426
Ensembl:
ENSGMOG00000035265
LinkDB
All DBs
Position
21:11357346..11366493
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AA seq
741 aa
AA seq
DB search
MDEVETAGYVVPCAVCSAVNWAISADLKYYCKSCHNVIDKTAEVADHTFLDYANRITDLT
SSRQRRVVEYGRKWKVCEGFQFILKHQAEALILLGVHSQFKDDVLCQLWRLYLQKSRQAY
TKNPLSSKVPPGARDTDTDPSDNDTGASSATSTGAPSATPPGAPSATPPGASSATPTGAS
SATPTGAPSATPTGASSTTPTGASSTTPTGAPSATSTGAPSATQTGAPSANEKEGEPSAK
EVEGEPSANETEGQSANEMEGSPGGLSAFDTDGGPSASDTEGRPSAISSTSGASSDEDRP
KRHKVYPSGSEDSGTYLSLRLRRSNGLMSMNKTLALLYLGLLWCREALTLADLLRLVREG
HLPFINAFECLPEEMKLFGRDLPVFRVQSIPSYRTVHQEACGLAVYMKLPSFPPVDLKCL
QHPTLLTMRYLLLLNLPDQLHPWVCRVIALVGLDQGSALTFDPTARSRLPYYDVQAAALI
VVTLKMVFGVDDRSEWDLSNGASAKNKDDPDQRNFSMRRWYRLLQAALIRARRREEDHTA
RMQWTAQKPIYPSWERKASYIKKRRMVDQLRTAFTRLSGTPAEPMRRPPSSFRFRWGGEE
GEAGWDGPSLSHTVLDTVVKRRRGGETAVNEAYWHPPLKKCHSWACRRHFEEDRATLPRM
YCWLLELFSFLLGVKQALVHEEVLRAERLLLGRTQSSSKSRGGEEEEEERRTRRRRSGGG
TRKTGRANLIPDPGSSRKRKA
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagtcgaaacagcgggctacgttgtcccatgtgcagtgtgctcggctgtaaac
tgggctattagcgctgatctgaaatactactgcaagtcctgccacaatgttattgataaa
acagctgaagtggccgaccacacattcttggactatgccaacagaatcacagaccttacc
tcttctaggcaacgacgggttgttgagtacgggcggaagtggaaagtgtgtgaaggtttc
cagttcatcctgaaacaccaggcagaagctctgatcctcctgggagtgcactcacaattc
aaggacgacgtgctgtgtcagctgtggaggctgtacctccagaagagccggcaagcctac
accaagaaccctctgagctctaaagtcccccctggggccagagacacggacaccgacccc
tcagataatgacacaggggcctcatcagccacttctacaggggccccatcagccactccc
ccaggggccccatcagccactcccccaggggcctcatcagccactcccacaggggcctca
tcagccactcctacaggggccccatcagccactcccacaggggcctcatcaactactccc
acaggggcctcatcaactactcctacaggggccccatcagccacctccacaggggcccca
tcagccactcagacaggggccccatcggccaatgagaaggagggagagccctcagccaaa
gaggtggagggagagccctcagccaatgagaccgaaggccaatcagccaatgagatggag
ggaagtccggggggcctgtcggcttttgacacggacgggggtccttcagccagcgacaca
gagggccggccctcagccatatcctcaaccagtggggcctccagtgatgaggaccggccc
aagcgccacaaggtgtacccctcgggctccgaggactctgggacctacctgtccctgcgc
ctcaggcgctccaacgggctgatgagcatgaacaagaccctggccctgctctacctgggc
ctgctgtggtgccgcgaggccctcaccctggcggacctgctcaggctggtccgggaggga
cacctgcccttcatcaacgcctttgagtgtttgcccgaggagatgaagctgtttggccgc
gacctgcccgtcttcagagtccagtccatcccctcctaccgcacggtgcaccaggaggcg
tgtggcctggcggtgtacatgaagctgccctccttcccccccgtggacctcaagtgtctg
cagcaccccaccctgctcaccatgcgctacctgctgctcctcaacctgccagatcagctc
cacccctgggtgtgccgggtcatcgccctggtgggtctggaccaggggtctgccctgacc
tttgaccccacagccaggtcgcgcctcccctactacgacgtgcaggcggcggcgctcatc
gtggtcaccctgaagatggtgtttggcgtggacgaccgcagcgaatgggatttgtccaat
ggagcatctgctaagaacaaagacgatccagaccagcgtaacttcagtatgaggcgatgg
taccggctgctgcaggcagcgctgatcagagcccgtcggagagaggaggaccacacggcc
aggatgcagtggacagcccagaagcccatttacccatcctgggagaggaaagcctcctac
atcaaaaagagacggatggtggaccagctgcggacggcgttcacccggctctccggcacc
cccgcggagcccatgcgccggcccccctccagcttcaggttccgctgggggggggaggag
ggggaggcgggctgggacggccccagcctgagccacacggtcctggacaccgtggtgaag
agacggcggggcggcgagaccgccgtcaacgaggcctactggcacccgccgctgaagaag
tgccattcctgggcctgcaggaggcactttgaggaggaccgggccacgctgcccaggatg
tactgctggctcctggagctcttctccttcctgctgggggtgaagcaggcgctggtccac
gaggaggtgctccgggcagagcgcctcctgctcggcagaacgcagagctcctccaagagc
cggggcggagaggaggaggaggaggagaggaggacgaggaggaggaggagcgggggggga
accagaaaaacaggaagggccaacctcatccctgacccagggagcagcagaaaaaggaaa
gcttga
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