Gadus morhua (Atlantic cod): 115534788
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Entry
115534788 CDS
T10832
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04140
Autophagy - animal
gmh04148
Efferocytosis
gmh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115534788 (vps18)
04148 Efferocytosis
115534788 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115534788 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115534788 (vps18)
Membrane trafficking [BR:
gmh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115534788 (vps18)
Hops complex
115534788 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
TPR_Vps41
zf-C3HC4_2
zf-RING_16
zf-RING_11
zf_RING_Vps8
zf-RING_2
zf-RING_Vps41
DUF5600
zf-ANAPC11
zf-RING_UBOX
zf-rbx1
zf-C3H2C3
Apolipoprotein
DUF2229
DUF2175
DUF1664
zf-RING_5
HAP1_N
Motif
Other DBs
NCBI-GeneID:
115534788
NCBI-ProteinID:
XP_030201885
Ensembl:
ENSGMOG00000006080
LinkDB
All DBs
Position
21:complement(8990287..8997623)
Genome browser
AA seq
983 aa
AA seq
DB search
MASILDEYEDSQNTRQSAQQRSRLAAANIGITHSGFVNVRLEEEKPIFTKQRIDFSHLEK
INHFAVCNNQLCMSLGKDTLLRIDLAKPDQPNQMEMGRKDDCKVHKLFLDPSGSHLLISL
SSSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGTETNTGPILVGTSQGAIFEAEISA
TEGSLFNTNPDQYFRQVHSLEEDGRPAPVCCLEVERGLENKVFIIATTRKRLFQFVGKVA
EGSEQQGYSSIFSQNQDLLPSFQEFPVNMGYSEITFYTSKLRSSPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWEYTSDIDFDLNKPISIVLTQFHFLLLLPDRVKAVCTLNGQVVHE
DVFPDKFGPLKKMIKDPAGGLVWIYTERAVFRYHIQREARDVWQMYMSTGKFDLAKEYCR
DRPECMDMVLAREAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEDALKEFLLKK
LNNLKPGERTQITLLVTWLTELYLNRLGQLESDDCSAPVYLETRGEFRVFLGSAKHKECL
FNNRTTIYDLLASHGNVDDMVYFSVVMQDYERVISHHCQHDDYGAALDVLSKHCDEKLFY
KFSPVLMQHIPKKVVDAWIQMGKRLDPKKLIPALMNYSQMGSTQQIKETIRYMEFCVYQL
TVTEEAIHNYLLSLYAKYKPESLLWYLEQAGTHASDIHYDLKYALRLCAEHGYLEACVLV
YKIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICGSLAEYNHHIEELKQEMEEATESAKRIRED
IQEMRNKYGVVESQEKCAACDFPLLNRPFYLFLCGHMFHYDCLIQEVTPHLSTFKQNRLE
DLQKKLAATAQASKSRHRPPPKEESDTASLGKASTGTSRETIKSDIDDVIASECVYCGEL
MIKSIDKPFIDPQKFEEEKASWL
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaatacttgatgaatatgaggactcacaaaatacaaggcaatctgcacaacag
cgtagccgccttgcagctgccaacatcggaatcactcattcaggcttcgtaaacgtgaga
cttgaggaggaaaagccgattttcaccaagcaaagaatcgacttttcccaccttgaaaag
atcaatcactttgcagtatgcaacaatcaactatgcatgagcttgggaaaagacactctt
ttgaggattgaccttgccaagccagatcaacctaaccagatggaaatgggacggaaagat
gattgtaaagtacataaactgttcctggatccctcaggctcccatctgctgatcagcctg
agcagtagcgagtgcctctatctgaacaggaacacccagaaggtgcgcagtctgtcccgc
tggcgaggccacctcatcgagagcgtgggctggaacaaactgctgggcacggagaccaac
acagggccaatcctggttggcaccagccagggcgccatcttcgaggcagagatatccgcc
accgagggcagcctcttcaacaccaatccagaccaatacttcagacaggtccactccctg
gaggaggacggtaggcccgcgccggtctgctgcctggaggtggagcggggcctggagaac
aaggtcttcatcatcgccaccacccgcaagcggctcttccagtttgtgggcaaggtggcg
gagggctcagagcagcagggctacagctccatcttcagccagaaccaggacctcctgccc
agcttccaggagttccccgtcaacatgggatacagcgagatcaccttctacacgtccaag
ctgcgctcgtccccgaaagccttcgcctggatgatggggaacggagtcctctacggtcag
ctggactacgtcaggcccgattccctgctcagcgatgtgcaggtgtgggaatacacgtcc
gacatcgactttgatctgaacaagcccatctccatcgtgctgacccagttccacttcctg
ctgctgctccccgaccgggtcaaggccgtctgcacgctgaacggccaggtggtccacgag
gacgtcttccccgacaagttcggccccctgaagaagatgatcaaggacccggcggggggc
ctggtctggatctacaccgagcgcgccgtcttccgctaccacatccagcgcgaggcgcgc
gacgtgtggcagatgtacatgagcacgggcaagttcgacctggccaaggagtactgccgc
gaccggcccgagtgcatggacatggtactggcccgggaggccgagcactgcttccagaac
aagcgctacctggagagcgccaagtgctacgccctgacccagaactactttgaggagatc
gcgctcaagttcatcgaggccaagcaggaggacgcgctgaaggagttcctgttgaagaag
ctcaacaacctgaagcccggcgagaggacgcagatcacgctgctggtcacctggctgacg
gagctctacctgaaccggctgggccagctggagagcgacgactgctcggcccccgtgtac
ctggagacccgcggggagttccgcgtcttcctgggcagcgccaagcacaaggagtgcctc
ttcaacaaccgcaccaccatctacgacctgctggccagccacggcaacgtggacgacatg
gtgtacttctcggtggtgatgcaggactacgagcgggtgatctcgcaccactgccagcac
gacgactacggcgcggcgctggacgtgctctcgaagcactgcgacgagaagctcttctac
aagttctcgcccgtgctcatgcagcacatccccaagaaggtggtggacgcctggatccag
atgggcaagcggctggaccccaagaagctgatcccggcgctgatgaactacagccagatg
ggcagcacgcagcagatcaaggagaccatccgctacatggagttctgcgtgtaccagctg
acggtgacggaggaggccattcataactacctgctctcgctgtacgccaagtacaagcca
gagtccctgctgtggtacctggagcaggcaggcacccacgcctcggacatccactatgac
ctgaagtacgccctcaggctgtgcgcggagcacggctacctggaggcctgtgtgctggtg
tataagatcatggagctctatgaggaggccgtggacctggcactgcaagtggacgtggac
ctggccaagtcttgcgccgacctacccgaggatgacgaggagctgaggaagaagctgtgg
ctgaagatcgcccgccacgtggtgcaggaggagaaggacgtgaagaaggccatgaactgt
ctgtccagctgcaacctgctgaagatcgaggacatcctgcccttcttccccgacttcgtc
accatcgatcacttcaaggaggccatctgcggctcgctggcggagtacaaccaccacata
gaggagctgaagcaggagatggaggaggccacggagagcgccaagcgcatccgagaggac
atccaggagatgaggaacaagtacggtgtggtggagtcccaggagaagtgcgccgcctgc
gacttccccctgctgaaccgacccttctacctgttcctgtgtggacacatgttccactac
gactgcctcatccaggaggtgaccccccacctgtcgaccttcaagcagaaccgcctggag
gacctccagaagaagctggctgccaccgcccaggcctccaagtcccgccaccgcccaccc
cccaaagaggagagcgacacggccagcctgggcaaggccagcactggcaccagccgtgag
accatcaagtcggacatcgacgacgtcatcgcgtctgagtgcgtgtactgtggcgaactg
atgatcaagtccatcgacaagcccttcatcgatccccagaagtttgaggaggagaaagcg
agctggctatga
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