Gadus morhua (Atlantic cod): 115534796
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Entry
115534796 CDS
T10832
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115534796 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115534796 (hbs1l)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115534796 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
DO-GTPase2
AAA_22
Motif
Other DBs
NCBI-GeneID:
115534796
NCBI-ProteinID:
XP_030201912
Ensembl:
ENSGMOG00000011843
LinkDB
All DBs
Position
21:complement(9437361..9457609)
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AA seq
703 aa
AA seq
DB search
MSRHRNVRGYNYDEDLDDDDVYGQSVDDDYCISPATAAQFIYSRQERQTPNVEPVEEGFE
EEEEVPMSPTVSPSLDPLEQAKLFSCLDQMRAVLGDTVPDSVLTRTALRFGFDPQKSLDA
VLSGDSTSSKTTNHRTVPEAPAQEEKTPATQRTNPEGLAAPRPEKAKGRGSTQNQLETEV
VPKVARMTVSGKKQTMGFDVPSAEENGVSGASMRRGASPAPGTPGGPETPSRRPETPSKG
GGVGGDDSIISTPGRTPGKARPQINIKVELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLL
FLLGHVNQRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVVT
LMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQL
AVAVNKMDQVSWQQDRFQEIIAKLGHFLKQAGFKESDVFFVPTSGLSGENLTTRSAVSEL
TCWYSGPSLLEQIDAFKPPQRSTDKPFRLCVSDVYKDQGSGFCVTGKIEAGYIQTGDRML
AMPPNETCTVKGITLHDEPLDWAAAGDHVNLTVTGMDIIKINVGYVFCDPKEPIRACTRF
RARILLFNIEVPITKGFPVLLHYQTVSEPATIKKLVSVLHKSNGEVLKKKPKCLVKGMNA
IVEVQTQRPVALELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgtccgagggtacaactacgacgaagacttagacgatgatgac
gtgtatggacagtctgttgacgatgactactgcatttcaccagcaacagcggcacagttc
atctactcccggcaggagaggcaaacacccaatgtggagcctgtggaggaggggtttgaa
gaggaagaggaggtccccatgtcccctactgtcagtcccagcctcgaccctcttgaacaa
gccaagcttttctcctgtctggaccaaatgcgggctgtgcttggagacactgtccccgat
tcggttctgacccggaccgccctgcggttcggcttcgaccctcagaagtcccttgacgcg
gtgctgtcaggagatagcacttcttctaaaaccaccaatcacagaacggtaccagaggca
ccagcccaggaggagaagaccccggcaacacaaagaaccaatccagagggtttggcggca
ccaagaccagagaaagccaaaggcaggggttcgactcagaaccagctggagacagaggtg
gtaccgaaggtggcccgcatgacggtgtccgggaagaagcagacgatggggttcgatgtc
ccgagcgccgaggagaacggcgtcagcggcgcctccatgcggcggggggccagtccggca
ccgggcacgccaggtggacccgagaccccatccaggcggcccgagaccccctctaaaggc
ggaggagtgggaggagacgactccatcatatccactccgggacgtacccccgggaaggcc
aggccgcagatcaacatcaaggtggagctggagaagaggcagggcggcaagcctctgttg
aacctggtggtcatcggtcacgttgacgcggggaagagcaccctaatgggacacctgctg
ttcctgctgggccacgtcaaccagcgcaccatgcacaagtacgagcaggagtccaagaag
gccggcaaggcctccttcgcctacgcctgggtgttggatgagactggagaggagagggac
agaggtgtgacgatggacgtcggtatgactaagtttgagacggactcgaaggtcgtgacc
ctgatggacgcgccgggccacaaagacttcatcccgaacatgatcactggggctgctcag
gcggacgtggccgtgctagtggtggacgccagccggggcgagttcgaggcgggcttcgag
gcgggcggtcagacccgggagcacggcctgctggtgagatctctgggcgtcacccagctg
gccgtggccgtcaacaagatggaccaggtgagctggcagcaggatcggttccaggaaatc
atcgccaaacttggtcacttcctgaagcaggcgggcttcaaggagtctgatgtcttcttc
gtcccgaccagtggcctgtcaggagagaacctgaccaccaggagtgctgtgtcagagctc
acctgctggtactctgggcccagcctgctagaacagatagatgccttcaaaccgccccag
aggtctacggacaagccgttcagactgtgcgtgtccgatgtctacaaagatcaggggtca
ggattttgcgtcacagggaagatcgaagcgggctacattcagacaggggacagaatgctt
gccatgcctcccaacgagacatgcactgtcaaaggcatcacgctccacgatgagcccctg
gactgggctgcagcaggagaccacgtcaacctcactgtcacgggcatggacatcattaag
atcaatgtgggctatgtgttctgtgatccgaaggagccaatcagagcctgcacacgcttc
agagcacgaatcctgctctttaacatagaggtgcccatcacaaagggcttccctgtgctg
ctgcattaccagacagtcagtgagccagccaccatcaagaagcttgttagtgttctacac
aagagtaacggggaagtgctcaaaaagaaaccaaagtgcctggtgaagggcatgaacgcc
atcgtggaggtccagacgcagaggcccgtggcgctggagctctacaaggactacaaggag
ctaggccgcttcatgctacgctacgtgggctccaccatcgcagccggggtggtcaccgag
atcaaagaatga
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